si:ch211-108d22.2 (LOC108272973)


Basic Information

Item Value
gene id si:ch211-108d22.2
gene name LOC108272973
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3079234 ~ 3112252 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301457.1
cgGGGTCTTGATGAAGCAGCGCCACTTCAGCCTGGCGGTGAGAGCGCGTGTCCGTCACGCGATCCTCCCAGGTGCGCAGTTTGGAAGCGCAAAAAGCTGCTTATTTGTAAACAAGTTCAGAAAATCCTTTTTGTTCAAGCTTCAAAGCCTCGTTTCACTGTAACTGCTGGGAGCTCAGACAGGTGTGTAGCCTCCATTAAACACTCCCATGAAGTGTCGAGTGAGCTTCACCGTTTATATTTCCGCCTTTATTTCCGGATATCTACAAGATCTTCCTTAAACATATTAATGTGCAGATTTCTCTGTACAAGCTTGAAGTAGCaggaaaaaaacccagctttactttttaaactttactcGCAGTGTGATCGGACACTGGAAATGCAACATTCAGCCCGAGCAAGCGCCAGATACATCCTCATGTTAATGAACCTGACCTACAGTTTAAGAAGGGATGCAATTTGACCTGCCTCCATAGAttcatacagtcatgggaaaacaAAGatcATAGATAAGTATGCTTATGAAGCTGAAGAACTGACAGCATCAGTATGGCTTCTTCAAATCAACCTGCAAGACAGTATGTCAGAAATGCTCGTGAAAACCTGGTTGGACATCTACAAAACCTGCCTCTTATTGTTGAAAAACTTCTCCAACAGAATGTTTTCAATGGCAATGAAGTTAGTGAAGTTGAGGCAGAACCagacaaatacaacaaaaccaGGAAGACTCTGGACTGGGTCTTAAACAAGGGTGAAGAGGCCTGCTATCAGTTTCTCAGAATACTGGATCGTGAGAGGAAATCAGTCTTCCCAAAGCTGGATTTGTCTAGCCAGACTCCTGATCTACATACATGGATTTCCTTGTTCTCATTTAGTGATGAGCCTGAAGATGATTATATTCAGGGACCTGTCTCATGTCATCAGCTGCAAAACTTTTTGAagacaagaacaaaacaaattCTTGGTCAACAGTGGAGGCAGAGCCTGCAGTTCTATGGAGGAAAAGTacaagaaaacttcacctttaTTCCTCTGGTGTtggatacagatacagaaaagAATACAGCCCATAACAAAATCATACTCAAGAGCAAGAAATCTAAAAAGTCCCGTTCAAAAAAGATGAAGGCCTACATACCAAGAGACACACGGGGAAAATCCCCTGAAGATTTGCTTAATAGCAGGGAGAAGAGTATCCTCATAGTAGGAAAACCTGGAATTGGGAAGACAACAGTTGTTCAACAGATGCTGCATCACTGGGCAGAGAGACATGACAGAAACcttgattttgtgttttattttgatgaAAGCACACTGTCAAATACCTCAACTATAGTTAGCTTAGAAAATCTTCTGCTTAGcacatttttaatgtcaaaTCCACAGCTTAAAGAAAATGCTGAAGAAATTTTGCAATATCTTCAAGAATATTCTGAAAGAGTCACTATTGTTTTTGATGGAATCATAAATTTTCTGGACAACAAGATTTTGCTGGGGATCATGCAACATGAACTTCTGCCTGAAGCAAAGATTGTGGCAACATGCAGGCCTGAAGTAGAGGATGAGCTCTCTGACTGGCCAACATGCAAAGTGTATGTTAAGGGATTCAGTGAAGACTCAATTTATgatgtttttaggaaaatatcaGATAATAATCCAGACTTGGTAGACAGTGTAATAAACAATCCTGCACTCTTCAGTCTCTGCCACGTCCCTATGTATGCTTTCCTGATGGCAGCCTGCATTTCAAATCACACTTCTGAAGAAGCACAGAAACCATGCACAGCTAGTGAGCTGTATGTACAAATATTTTGTCACTGTCTACAGAGACATGAAAATAAGAAATTGCAGCACTTAGATGGACACATTAAAAACTGCAGAGACATGGTCTTATCTTTAGCAGAGAGTGCTTTCAGTGCAACCAAGTTAAAAACCATCAACCTGCAGTTTGATTATGATGAGAAAGGCATTGCTGGTGTTTTCCTGAGGTCAGTCTCAGTTGTGTCACCAGCATGTGCCAAGccattttgtgcatttcttcACAACACAATGCAGGAATTTTTTTCTGCCATCTGGCTTctagaaaaaacagaaatagttGATGAGGTACTACATCTATGCCAGAATGAAGACAGTAAGCACATGAAACATGTAATTCCTTTTCTGTGTGGACTTCAATCACAAACCAACATTGATCATCTGAAGTGTCTCTTTCCATTGAACAAAGTCAAGGAAAATATTGATGGTTTCTTTGAGAAGGTCTTAAACACTTTTCTCCATGATGAACCAGATGAAGAAACTGTTGACATTGCCTTCATATGTCAGTGTCTGTATGAATTTCAGTCACCTGAAACCTGTTGCTCATTTCTAGAGAGAATAAACTATCATCTAGATTTGAGTGAGGACCATCTCGGCCCTTACACATGCTGTGCTGTATCCTATGTAATCAGCCAATCCAGTAACAAACAGGTTCACCTTGATTTGGAGAACAGTGCTGTGTCTCTCTCAGGGCTGAAGACAATTCTCAAACATTCATGCTATCTAAGGGATTTATCAACAACACTGTGTCAAGTCTGGACAATCGCCTTGAAGTGTGAGGAACTGAATTATCTGATACATCTCCTGCAATTATGTGGAAATGAGATTCACATCCCAATGAGCAGTCAAACAGATGTGCTTGAGCAAGCTGGAAAAATTATAACTCAAAATGCAGAGCAAACAAATCTCCATTTACACTGTGATAAAGACCCACAACAGCTCACACATCTTCTCTTTAAAACAGTGTTCTCATGGCTGCCGCACATCAGCTCTCTCCAATTTGATCCtaaacagggagagaaagaacaagaaaagaGATGGAGAACATTTAAACTGGATTTGTGTCTGCAAGCAGCTCTACACCAACCACAAAACTTCTGGCAAACAGTGCAGAAAGTGATGCCTTATAATTATGAAGAACAGAGTGATTTCCTGCTGGCTCTGTACTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCACTTCCTGCAGTCTGGTACATAAATCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGATGCTGATAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGAATTTGATCCtaaacagggagagaaagaacaagaaaagaGATGGAGAACATTTAAACTGGATTTGTGTCTGCAAGCAGTTCTACACCAACCACAAAACATCCAGCAAACAGTGCAGAAAGTGATGTCAGATATTATAATTGAAGAAGAATTATGA

Function

NR:

description
uncharacterized protein LOC109877531 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301457.1 True 3389 mRNA 0.41 7 3079234 3112252

Neighbor

gene id symbol gene type direction distance location
LOC113523961 LOC108272987,LOC106591917 coding downstream 5 2914034 ~ 3079229 (-)
LOC113523971 LOC108272994 coding downstream 555055 2517791 ~ 2524179 (-)
cbx2 cbx2 coding downstream 572093 2498979 ~ 2507141 (-)
tmem100a tmem100 coding downstream 677073 2397416 ~ 2402161 (-)
tmem220 tmem220 coding downstream 1067242 2008006 ~ 2011992 (-)
LOC113525116 LOC100526730,LOC108272815,LOC108280069,LOC108279574,LOC108280065 coding upstream 6083 3118335 ~ 3295290 (-)
trnay-gua_7 NA coding upstream 57082 3169334 ~ 3169421 (-)
LOC117595704 NA coding upstream 66265 3178517 ~ 3188087 (-)
jpt1b hn1 coding upstream 94656 3206908 ~ 3222780 (-)
LOC113534415 LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536 coding upstream 137834 3250086 ~ 3293868 (-)
G399494 NA non-coding downstream 8966 3011867 ~ 3070268 (-)
G399491 NA non-coding downstream 32722 2957236 ~ 3046512 (-)
G399492 NA non-coding downstream 43579 3027698 ~ 3035655 (-)
G399496 NA non-coding downstream 79778 2993840 ~ 2999456 (-)
G399348 NA non-coding downstream 176483 2898608 ~ 2902751 (-)
G399532 NA non-coding upstream 55625 3167877 ~ 3168603 (-)
G399507 NA non-coding upstream 70720 3182972 ~ 3200751 (-)
G399537 NA non-coding upstream 73584 3185836 ~ 3194908 (-)
G399530 NA non-coding upstream 123391 3235643 ~ 3249326 (-)
G399541 NA non-coding upstream 131305 3243557 ~ 3245044 (-)
G399490 nup85,LOC106601803 other downstream 115077 2961713 ~ 2964157 (-)
G399028 NA other downstream 652628 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 701603 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 1198176 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 1487500 1565795 ~ 1591734 (-)
LOC113525117 NA other upstream 35047 3147299 ~ 3196563 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 111813 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 1008145 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 1038647 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 1182964 4295216 ~ 4338427 (-)

Expression


Co-expression Network