LOC113534415 (LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536)


Basic Information

Item Value
gene id LOC113534415
gene name LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3250086 ~ 3293868 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301458.1
TATATGAAAagaataatttaacaaaaaccTATATGCTAAGAATGAAAAGTTAGCAGTCACCGCTTGAAAAAATGCTAGATTCTGTTCATTGTGAGTAAAATGATGTCTTTATAAAAATTAACCATGCAGTCAAACAGTAAAGAGTAGGCATGAGACAATACACTAAAGCCATGATACGAGACATATCCCTCTACAGGCTTCACAAGATGATAGTGATGAGAGTGTGTTGACACAAATTAAACCGCTGCAATATCTGTACAATAGGGCCATAAtcaaagtttttaattttttccccagGCGTTAATTATAACCTGTATTTCAGACTGCGTTCAAGCCAACCATGATAGAAACTGTAGTGCACATATACACAACGGTTTATGGTAACTATCTTTGGATGGCTACACTTTGGatatctgctgtgaattctggacagtttgaaaatgttgagcagtagtgtacTACAAGccatttcagtgttattttttccAAGTTTCACGCAGGCCAAATGAAACAAGGCTGTGGACTATTAAAAAACTCcagagaaagagatcagactcaccagcaCCCAGCTGTGTCTCCATGAAGAGTGATGAGTCTGTGGATCCTCCTCGGAACTTTAAAAATGGAAACCCTTCATGTGCACACAGTAAACAACAGAGAaggagatcagactcaccagaacccagctgtgtctCCATGAAGAGTGATGAGTCTATGGAGCCTCCTCTGAACTTTAGAAATACAGACTCCTCATCTGTACCCAGAGTTCTACAGAAGTCAGGagacagaagagaaaagaacatcATCACAGCTACAGGACACGACCCAGAATCTGCTGCTGTAAATGAATTCCAGAAAAAGTTCAAATTAAATCTGATGAagaaatttcagtgtttaaatggAGTGATAATAAACCAGGAAAACCGAACACtcctgaatgagatctacacagagctctacatcacagagggagACAGTGGAGACATCAATAaagaacatgaggtgagacagatcgAGGCAGCATCCAGGAGAACAACAACAGAGGAAACACCAATCAAATGCAATGACATCTTTAAGCCCTTATCTGAACAAGACAAAcccatcagaactgtgctgacgAAGGGAGTCGCTGGCATCGGAAAAACAGTCTccgtgcagaagttcattctggactgggctgaagggaAAGCAAATCAGGACCTCCACCTCATATTTCCACTTCCTTTcagagagctgaatttgatgaaggaCCAAAAACTGAGTCTGATGGATCTCCTTCATGTctgttttaaagaaacaaaagaaacagaaatgtcCAGTGTGAAAAAGGTTCTGTTGATTTTTGATGGATTGGATGAGTGTCGTTTTCCTCTGGATTTCCAGAccacagtgagagtgtgtgatgtaaatgaATCAGCATCAGTCCATGTGCTGCTGATAAACCTGATCAaagggaatctgcttccctctgctctcatcTGGATCACTTCCCGACCAGCAGCAGCTGATCAAATCCCCTCTGAGTATGTCCATCGAGTCACAGAGATACGAGGGTTCAATGACCCACAGAaggaggagtacttcaggaagagaatcagtgatcagagcctggccaataacatcatcacacacctgaAGTCAttaagaagcctctacatcatgtgccatatcccagtcttctgctggatttcagccactgttctagagagagtGTTgagtgaagcagagagtggagagatccccaagactctgactcaaatgtacacacacttcctcatcaTTCAGACAAACATCATAAGAGAAAAGTACTCAAAGAAGCAGGAGAGTGATGAAGAAATGCTTCTCAAACTGGGACACCTGGCTTTTCAGCAGCTGCAGAAAGgcaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtgacagaagcagcagtgtactcaggtgtgtgtacgcagatcttcagagaggagtttgggcttcaccagAGTAAAGTGTATTGCTTTGTTCATCTGAGCCTCCAGGAGCATCTCGCAGCTCTGTATGTGCACCTGACATTCatgaaggaaaagagaaatgcTCTTGTACAGAGTGGGGTCTTTAAGACAATTTCTGATGTCCACGAGAATACTGTAGATCAGGCCTTAGAATGTGCATCTGGACATCTGGATCTTTTCCTCCGCTTTCtcctgggtctctcactggagtccaatcagaaaCTCTTACATGCCTTAGTAACACAGACAGGAAGTAGCTCCCAGACAGAAAATAGGAAAACAGTACAGTACATCAAGAAGAAGATCAGTAGAGATGTTTCtacagagaaatccatcaatctgttccactgtctgaatgaactgggTGACAATTCTCTAGTGGAGGAAATCCAACGCTACCTGAAATctggaaaacaaagaaaactctCTTCTTCACAGTGGTCTGCTCTGGTGTTTGTCTTACTGACTTCAGCACAGGAGCTGGAGGAATTTGACCTGAGTAAATATACCAGTACAGATAAAATAAGAGAAGAGATTGTTGTGAAGGTGATGCCTGTGATTGCAGCATCAAGGAAAGCAATTATCAGGTGTGATACAATTCAAGAAAGAAGTTGGTCAGCTCTGGCCTCAGTGCTCAACTCAGATACCTCCAATCTGAGAGAACTGCATCTGACTGTGAATACACTGGATCTGTCTGAGAATAAActaggagactcaggagtgaagaatctctctgctctgttggagaatcctcactgtaaagtGAAACAGCTGAGGTTGCGTAGGTGTGGTGtttcagatgaaggctgtgctgctctggcttcagctctgagatcaaacccctcacacctgagagaactgaatctgtcTGAGAATAATctaggagactcaggagtgaagtgtctctctgctctactggagaatcctcactgtaaactggagatactgagGTTGCGTGGTTGTGgtgtctcagatgaaggctgtgctgctctggcttcagctctgagatcaaacccctcacacctgagagaactgaatctgtgTCAGAATAAACTAGGAGAATCATGTGGGAAGTGTCTCTATGCTctactggagaatcctcactgtaaactggagatactgagGTTCTGTGGTTGTGgtgtctcagatgaaggctgtgctgctctgacttcagctctgagatcaaacccctcacacctgagagaccTGGAGCTGTCTGAGAATAATctaggagactcaggagtgaagtgtgtctctgctgtactggagaatcctcactgtaaactggagatacTGTGGTTGCGTGGTTGTGgtgtctcagatgaaggctgtgctgctctggcttcagctctgagatcaaacccctcacacctgagagaactggatctgtctgAGAATAAActaggagactcaggagtgaagtGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301458.1 True 3435 mRNA 0.44 11 3250086 3293868

Neighbor

gene id symbol gene type direction distance location
jpt1b hn1 coding downstream 27306 3206908 ~ 3222780 (-)
LOC117595704 NA coding downstream 61999 3178517 ~ 3188087 (-)
trnay-gua_7 NA coding downstream 80665 3169334 ~ 3169421 (-)
si:ch211-108d22.2 LOC108272973 coding downstream 137834 3079234 ~ 3112252 (-)
LOC113523961 LOC108272987,LOC106591917 coding downstream 170857 2914034 ~ 3079229 (-)
gga3b gga3,LOC106606567 coding upstream 2051 3295919 ~ 3309397 (-)
trnae-cuc_42 NA coding upstream 17493 3311361 ~ 3311432 (-)
evplb LOC108272806 coding upstream 88246 3382114 ~ 3403530 (-)
atg4db LOC108272831 coding upstream 125512 3419380 ~ 3427527 (-)
mast1b mast1,LOC107567212 coding upstream 139860 3433728 ~ 3464801 (-)
G399530 NA non-coding downstream 760 3235643 ~ 3249326 (-)
G399541 NA non-coding downstream 5042 3243557 ~ 3245044 (-)
G399507 NA non-coding downstream 49335 3182972 ~ 3200751 (-)
G399537 NA non-coding downstream 55178 3185836 ~ 3194908 (-)
G399532 NA non-coding downstream 81483 3167877 ~ 3168603 (-)
LOC113534314 NA non-coding upstream 66803 3360671 ~ 3363611 (-)
LOC113534841 NA non-coding upstream 67014 3360882 ~ 3360954 (-)
LOC113534843 NA non-coding upstream 67880 3361748 ~ 3361826 (-)
G399629 NA non-coding upstream 121097 3414965 ~ 3431282 (-)
LOC117596450 NA non-coding upstream 220944 3514812 ~ 3516233 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 15762 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 53523 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 285929 2961713 ~ 2964157 (-)
G399028 NA other downstream 823480 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 872455 2354909 ~ 2377631 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 826529 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 857031 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 1001348 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 1303932 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1667234 4961102 ~ 5008464 (-)

Expression


Co-expression Network