si:dkeyp-92c9.4


Basic Information

Item Value
gene id si:dkeyp-92c9.4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4667787 ~ 4691369 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301462.1
ctGTGAGATGATGAGAGCTGAATGGTGTTGACGGTGGTGTTAGCATGCAAGTTGAAGCTGTGGAAGCTGATCTAGCTCAGCAGAGGGTACAGATGGAGGTCTGTACAATGCGATACACATGGGCAGCTCTCTGCATCACCGTGTTAGTGATGTCAGGTTCAGTGACATCTAAGGAGGCTTCAGTGACTTATGATCTcaccatggacatcaccaaccGCATCTACAACGACTCTCTGCTCAAGCCTGGCTCTCCTGATTATGTGATATTGTCCACACAAGTTAGCGGCGCActcTACTCCATCTACGGCTGTGTCacttgtaacacacactcgtttTATCAAAAAGTATCAGCGATGACCTTCAGCATTAGCTAA

Function

NR:

description
PREDICTED: mucin-1-like

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301462.1 True 374 mRNA 0.48 5 4667787 4691369

Neighbor

gene id symbol gene type direction distance location
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding downstream 114421 4534996 ~ 4553366 (-)
thbs3b LOC108272910 coding downstream 142380 4507481 ~ 4525407 (-)
LOC113543882 NA coding downstream 166929 4497893 ~ 4500858 (-)
gh1 NA coding downstream 176500 4488748 ~ 4491287 (-)
zfpm2b LOC108272465 coding downstream 211187 4418578 ~ 4456600 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding upstream 3097 4694466 ~ 4706433 (-)
sema4ab LOC108272624 coding upstream 18369 4709738 ~ 4747838 (-)
pex11b pex11b coding upstream 145481 4836850 ~ 4839788 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding upstream 149534 4840903 ~ 4850568 (-)
syt11a LOC108272614 coding upstream 165851 4857220 ~ 4877644 (-)
G400432 NA non-coding downstream 104423 4562211 ~ 4563364 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding downstream 105767 4558488 ~ 4562020 (-)
G400428 NA non-coding downstream 133656 4533841 ~ 4534131 (-)
G400112 LOC108272813 non-coding downstream 374630 4234403 ~ 4293157 (-)
G400133 NA non-coding downstream 383394 4284049 ~ 4284393 (-)
G400477 NA non-coding upstream 88242 4779611 ~ 4785657 (-)
LOC113543895 NA non-coding upstream 121292 4812661 ~ 4817295 (-)
G400494 NA non-coding upstream 142385 4833754 ~ 4833983 (-)
G400503 NA non-coding upstream 190337 4881706 ~ 4884003 (-)
G400500 NA non-coding upstream 219981 4911350 ~ 4918883 (-)
polr3gla LOC108272317,LOC108415116 other downstream 32730 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 329360 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 508037 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 534865 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1433463 3224065 ~ 3234324 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 269733 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 436866 5128235 ~ 5140380 (-)
G400815 NA other upstream 896029 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1481619 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1680248 6371617 ~ 6374500 (-)

Expression


Co-expression Network