LOC117596409


Basic Information

Item Value
gene id LOC117596409
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5151088 ~ 5152608 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301465.1
TTATGTTTTGTATATGTGAACAGGTTGCTATTAAATGTGTGGCCAAGACTGTCCATGACAAATATATCGGCATTCCGGGAGAGATGCGTCCCCTGCCTCTGGAGGTAGCCTTGATGCAGATGGCGTCCATGCCGCCTCGTTGTGAGAATGTGGTGGAGCTGCTGGAATGGTTTGACATGTCCAATTGGGTTGTCTTGGTTCTGGAGCGACCCAGTCCCTGCATGGACCTGCAAAGGTTTTGTAGGCGTAACAACGGGCTACTGTCTGAACCACTGGTTCAAGACATCATGTGGCAAGTGGTTCAGGCTGCTCATCACTGCTGTAACAGTGGAGTTCTTCACCGTGACATCAAAGCAGAGAATCTTCTGATCAACACTAAGACATTGCTAGTGAAGTTGATCGACTTTGGCTGTGGGGACTTGTTGAAGGACTCCCCCTATACAAGATTTGCAGGAACTCGAGCTTATCATCCTCCCGAATGGATACGTGACAGACAGTATCTGGGACGTCCTGCTACTTTCTGGAGTCTGGGTGTGCTCCTGTTTTACTTGgtctgtggacacctgcccTTTAAGACCAAGGATGAAATTACTGATGGGCACATAAGTGTAGATCATGATCTGTCTAGAGGAACCATCAGATGCATGTCACTCCAGCGACTGTGGCGGGTGAAACAGGTTTTTGCAGCTGGCTCTTTTGGCACACCACTGGATAGGCCTCATGGAACACCACTGGATTCAAATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301465.1 True 746 mRNA 0.49 4 5151088 5152608

Neighbor

gene id symbol gene type direction distance location
LOC117596451 LOC108261350,LOC108261581 coding downstream 23651 5120270 ~ 5127437 (-)
si:ch211-195b13.1 si:ch211-195b13.1,LOC108273319,LOC103036792,LOC108411161,LOC105892152,LOC104955017 coding downstream 91505 5053765 ~ 5059583 (-)
eya3 eya3 coding downstream 99046 5040286 ~ 5052042 (-)
eepd1 eepd1 coding downstream 196842 4928478 ~ 4954246 (-)
snapin snapin,LOC106569889 coding downstream 240111 4908526 ~ 4910977 (-)
si:dkeyp-92c9.2 LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595 coding upstream 56545 5209153 ~ 5213318 (-)
LOC113543887 LOC108262220 coding upstream 62392 5215000 ~ 5221257 (-)
LOC113543693 LOC108273363,LOC108262220 coding upstream 76659 5229267 ~ 5232051 (-)
LOC113543750 NA coding upstream 98508 5251116 ~ 5257472 (-)
LOC117596412 LOC108262220 coding upstream 105947 5258555 ~ 5263273 (-)
G400501 LOC108272940 non-coding downstream 115166 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 138293 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 232205 4911350 ~ 4918883 (-)
G400503 NA non-coding downstream 267085 4881706 ~ 4884003 (-)
G400494 NA non-coding downstream 317105 4833754 ~ 4833983 (-)
LOC113543905 NA non-coding upstream 87491 5240099 ~ 5242052 (-)
G400622 NA non-coding upstream 126295 5278903 ~ 5279314 (-)
G400676 NA non-coding upstream 218464 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 430947 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 658736 5811344 ~ 5812012 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 10708 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 142624 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 516031 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 812661 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 991338 4150899 ~ 4159750 (-)
G400815 NA other upstream 434790 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1020380 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1219009 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 2101825 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2716795 7869403 ~ 7917693 (-)

Expression


Co-expression Network