epb41a (epb41,LOC107712606)


Basic Information

Item Value
gene id epb41a
gene name epb41,LOC107712606
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14552044 ~ 14586242 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301474.1
AATACGTCATTGTCCACGTAGTGCCCTGTTTTTACTAGAACCAAAACACCGTGTGTGGAAAAGGGTTAAGATCGTTTTCCACCTGGCTCGCGCGTCTGAGGCTGAAACAGGAAGCTGGTTGATTCGGAGGTGTAGTGTGAGCTGCTGTTCCGCGTGGCTGAGGTAAAGGCGAGTGGTTACCATGACGACAGACAAAGCAAACAGTGGACAGAAGAAGCAGGTCTGTGAGCAGCAACAGGAAGATGGAGAGGCTGGAGTGCAAGAGCCTGACCCTATTGAGCCCCTTCAGGATGGACCCTCTGGCTCACCGCTGACTCCTGGAGGCTCAGAGGAGGGACAGCAGCCGAAACCACGACAGCACGCCTCGGGTGGCCGGGGCCTCTCACGCCTCTTCACCTCTTTGCTGAAACGCCGCTCACAGTGCTCAGAGGACGAGGGGGTCAAGGTGGAAAGAGgccaagagaaagagagtcacCCAGATCCCAAAGCTCCCATCGCAGACCCTGAACCTGAGCTACGCAATGAGGGGGAAGCAGCACTAGACCTGCACTCCATTAGCAGTTCTGAGAACCAGGTCAGAGTGGACCAAAAAGACACCATAGAGAGTGATGAATTGAAGGTGGAGAAGcgggaaaagaaacaaaagaaagatgagatgaataaaaacagagacaagaaaaagaaattagagaaaacaaaaagtgcagagaaaaaagaaaagaaagagaagaggaacAAGGACaagataaagaaagaagaaggaaagaaagagaaggagaatgaaacagaaaaagaagaaaaagaggtaGAGGAGCAGCCCAAGCCTGGGGAAGAGGAGACAGAGGCATGCAGGGCAGGGGAGGCGCCAAAGCCATTAAGCGAGGGGAGAAAGGAGAAGACTGCTGAGGAAGAAGTGAAGGCCCTTAAAGGTCAGCGCAGACCCAGGATCATGCACTGCAAAGTCACACTGCTGGATGACACACTGTTTGAGTGTGAACTGGatACATGGCTTGACTTCACAAAGGAGATTCGGAGACAAGTGCGAGggaTCAGCTATGACTTTACATTCAGTGTGAAGTTTTACCCACCTGATCCAGCCCAGTTATCTGAGGACATCACCagGTACTACGTGTGTCTTCAGCTGCGCAAAGACATCATGAGCGGCCGTTTGCCCTGCTCGTTTGTCACTCTAACCCTGCTGGGCTCTTATGCACTGCAGTCTGAACTGGGGGAGTATGACCCCGAGGTCCACGGCACAGACTACGCCAAGGAGCTCAGACTCATCCCAAACCAGACAAAGGAACTAGAGGACAAAGTCATGGAGCTCCATCGCACATACAGATCCATGAGTCCTGCTCAAGCTGACATGATGTTCCTGGAGAATGCTAAAAAGCTTTCTATGTATGGCGTAGATCTGCACCAGGCTAAGGATCTGAATGGGGTGGATATCATGCTGGGTGTCTGCTCCAGTGGTCTCATGGTTTATAAAGACAAGCTGAGGATTAATCGTTTTCCGTGGCCAAAAGTGCTGAAAGTCTCCTACAAACGTAGCAGCTTCTTCATCAAGATACGGCCATCTGAGCTGGAACTTTATGAGAGTGCCATTGGCTTCAAGCTGCCCAGTTACAGAGCTTCTAAGAAGCTttggaaagtgtgtgtagagCACCACACCTTTTTCAGGTTGACGTCTACTGAAGCTGCCACCACACCCAGAAAGCTCCTGGCCCTGGGCTCCAAGTTCAGGTATAGCGGGCGAACTCAGGCTCAAACACGGCAGGCTAGCTCCATGATCAACCGCCCTGCACCCCACTTCAAGCGCTTTGCCAGTAAGATGGCCTCTCACAGCTTAGACGGAGCCATGGTGTCCACCTTAAATAAGACAGCGCGTCCTGTCAGTGCTCCAATCATGTCTCCTATCTCCATTGGCGATACAGCTCCTTCTCACATGGTGACATCAGCCATACAGGTGAAGCACAAAGACGTGGTGACACCCACAAGTCCACCGTCTCACTCAGGAGAGAACAAGATTGAGGTAAAGGCAGAGAGCCGTGTGACTGGGACCTTCAAAATGCAAAGTGTTGCAGTTGAGGACACATCTGAGATCAAGATGGTTGTCCGGCGTGAGTGGCGGCACCGTGATGCCCTGGCAGTGACGACCGCTAATGGGGAGAAAATGAGTCAGCCCCCACAAGTGATGGTGCGAATGCGCAAGAAAAGAGCTAAGAAAATCGAGGGTGAGACTCTCTATACCAGACACAGCAACTTAATGTTGGAGGATCTGGATAAGACTCAGTCAGGGATTATGCGTCACCACAGCAGTATCAGCGAGCTCAAGCGCAGCTTCATGGAGTCCGTCCCAGAGCCACGGCCCAGCGAGTGGGACAAGCGCCTGTCCACACACTCACCTTTTCGCACAGCCAACATCAACGGCCAGATGCAGCCTGATGTGACTCCTGTAGTGAAGACGCATACAGTCACTGTTTCTGATGTGACCAACTCCCCGATCAGTGAGACTGCCACCAAAGAGGGTCCGATCCTGCACACTGAGACTAAGACCATTACATACGAATCTGCTCAACCCGATGAGAATGTAGGGATGCTGCTCAATGCACAAACCATTACCTCAGAGACTTTGAGCACTACAACCACTACGCAGATCACAAAGATGGTGAAAGGAGGAATCTCAGAAACCCGAATTGAGAAGAGGATTGTGATCACCGGTGACTCTGAAATTGACCATGATAAGGCTTTGGCTCAGGCGATAAAGGAAGCAAAGGAACAGCACCCAGACATGTCTGTTACTAAAGTAGTAGTGCATCAGGAAACTGAGATCACCCCAGAGTAAAATCTGAAACCCATACAGGAATCCATCCCTGATTCACGTACTCACCAGACTGCATGCTGAAGCTCCAGACTGCTTCTGCGGCCCCTCCCTCTGACAGGACAGCAGTGGAACGGCAGGATGAACACTACTGAAGACGCATCTCCCGGCTGTTCCAATGGATTCAACCTTTTACTGGAATCCACTTTTCCTATAGCATCATTTTTCTGtagcacctctctctctctctctctctctctctctctctctctccagatgTCCATATTGCAGCTGATTGTTTCATGTCAAATTGTTATAGCAAAGCAAATGAAGACATgacttttaatggttttaatgaaattttaaatgtagattTTAGTGGGTTTGATAAACAGTAgatttttaagacattttttaaacataaaacaattGTACTGTGGAGTTTGGGGTTTTTCACACGGGACAAAAGAGCAGCAGCATCTGAAATAAATTTTGgttctttgtcttcttttaaagaatattaattattgtgaacaagttcttcttcttcttcttactaATTATTATCATTGTAATGTCTTCTCTTTAGAttttcttcacttcactttccTTAACTTGAATTCTTTTGTCACAAATGGAATTGTTGTTTGTTGTGGCAGAAGGGTGCAGACAGTGAAACTGTATTCTATTTTTCTGTGTATCTTCAGttgttctttttgtgtgtgaacTCACCATTTTAGATTGCCTGCTCTTTTACATGCAGGTTTTATGCAGTCTAAGTTGTATTTTACCCCTCCTAAGCACCAAGTGCAGTGAACATCACCTGGATCGATTcttgtgcatgtgcacacacatccTGAGACCTTCCAACAGTCATGAAGTGAGGTATGATGTAGTATTTGCTATAAATAACATTGTCCTACAGCCTTCTTTCCACTACTTCTTCTTGTCTTGTAGACGTTGGACCACATTATGAAGCTTGTGACTATGTTCAGAGCTGCAGGTCCCCTGTCCTTCAACACTGGTGACAGTCTGTCATCTGCGGTGCAAGAGTGTAACTTTCCTACTTTTTCACCATCCACACAAAGTGAATGCTGCATTAGTTGGACTCCCTCACTAGCTTGCTAGCACTCTGTGAGTTATCTATGAACTGTCCTTGTTGCTCAGTACAGCACCCATCTGTTCCTGTGTGGAGTCTCACCCGGTGTTCTGAGTTTCCACTTCATCAGCAGTCTAGTGTCCTGCAGGCCTGTGAATATGTGCTGCTAAAGTATTCACATTCTCCCTCCTGgagcgtgtatgtgtgtatttctctTCCAAACTCCCACATATGCCACTCTCAGACAGACTAGTGGCTTGTGGTTACATACTACTCATGTCTTCAAATAGTGTTTCCCCCGCACCTTAACATACGCTGTCCTCAGTTAGCTGCCAAGTTAACTAATACACAGCTTGCAAAGCCATGCTCATGCTCGCAGTCGTGTAGCCCATCGCAGTATCCTCTGGAAGCCAGGGATGAGCATCATGTGGACACAGTCTTGGCATTGATCATCTTAAAGAAGCAGCTTTTGTTTCTGGTGGCCTTCACAGACAAAGCATGTCCAGATGTACGCTGCCTGAACAGAGAGTGCAGAAGCAATGATGAATTTCTAGTGAGATCATATAATATTGCTTTACGTATGGAATACCTGGGCAGTATGTTTGCTATTTTAGTTCTTGTATTGGAGCAAGCACTTCAATCTACAGATGTTGATCCCTCTGTTGGGGAGCTGGTTGAGGCCTTGCTCATAGCAGTGGAGCATCTGGGCTAGGATGGGGGGCTCTCCACTAATCTGGTTCATGTACAAAGCCAGGTGTCATTGGCACAGTCCGTGTTGTTGGCTGTGTGCAAATTAACTCTGCAAAATCTGCCCAGCAGGCACCTGAGCACTCCTCATTCACCCCATGGGACGGGCCCTAAACTGTGCCCCACACCACTAAGGAGTCACACAGAGTTTGCCCATTAAGGGCAGGGACTGTTGACGGGATGCTTCACAGCTGAAAATATTGCCACTGGGGAGCAACTGCATTAGATCTTTGGCTCTGATGACCTTTTTGCACGAGTAGAAACTCCTTTTCAGGTCTCATGGCCCTGACAGTGTCAGACCCCAACAAACTTGCCCCTGTAACCCAAGAAGCTCATTCCTTTTTGGATAGAGGAGCAATCGCAAAGGTATTGTCCAGGCCAAGTGGTTCTACTCTGTATTCTGTGTTGTTCAGAAGAAAGACAATGGTTTCTCTCCAATTCTTGATTTGACAAGGCCAGACAGGCCCCTAAAAGCCTTCTCCTTTCGCATACTAAGACTATTAAATGTAACTCATGCTGTACAGCCACAGGACTGGTTCACATCAGTGGATGCGCATGATGTACGTTTCCACATTCCCATCACCAGCAGAACACAAGCAACAAAAGATGCAGTTGAGGTGTGCCTTCAAAGGACAGGCACTCCAGTTCAGAGTTATCATTCAGAACTCGGAAGAAGGTTCCAGGGAATGATGGCAGTATTGTAACATTCTTCATGTCTTTGTTGGAAAGTCTCAGCATTTATGCACTAGGGCTTGAATGACTACTAATCTACTCAACCAATCATTCGAAAAAGTATTTGACTATTGGACTGTTTCTTCCATAGTTTAAGCAAGGCAGGTTTAAGCAGGATACTGCTACACTCTATGGCCGAAAtatgcacccctgaccatcacacacatgtgtggatcttctccaaactgttgccacaaagttggaagcacacaattgtattgaatgtctctgtgtgctgtagcattac

Function

symbol description
epb41 Enables several functions, including 1-phosphatidylinositol binding activity; protein C-terminus binding activity; and protein N-terminus binding activity. Involved in positive regulation of protein binding activity; positive regulation of protein localization to cell cortex; and regulation of cell shape. Located in several cellular components, including cytoskeleton; intercellular bridge; and nuclear body. Part of protein-containing complex. Biomarker of hereditary elliptocytosis.

NR:

description
PREDICTED: protein 4.1-like isoform X8

GO: NA

KEGG:

id description
K06107 EPB41; erythrocyte membrane protein band 4.1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301474.1 True 5646 mRNA 0.47 21 14552044 14586242

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_15 NA coding downstream 5866 14546106 ~ 14546178 (-)
trnat-ugu_14 NA coding downstream 8755 14543217 ~ 14543289 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding downstream 60781 14481937 ~ 14491263 (-)
kdf1b LOC108273298 coding downstream 81226 14460392 ~ 14470818 (-)
nudc nudc,LOC107689540,LOC107700719 coding downstream 99673 14440800 ~ 14452371 (-)
zbtb22b zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366 coding upstream 12253 14598495 ~ 14614761 (-)
ctdp1 ctdp1,LOC107552301,LOC107550068 coding upstream 36439 14622681 ~ 14637333 (-)
daxx daxx coding upstream 66102 14652344 ~ 14670040 (-)
gnb3b gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025 coding upstream 274012 14860254 ~ 14867598 (-)
si:ch211-264f5.6 NA coding upstream 311368 14897610 ~ 14917917 (-)
G405707 NA non-coding downstream 166394 14378892 ~ 14385650 (-)
G405681 NA non-coding downstream 222844 14256524 ~ 14329200 (-)
G405701 NA non-coding downstream 237210 14313739 ~ 14314834 (-)
LOC117596429 NA non-coding downstream 360289 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 474894 14076442 ~ 14077150 (-)
G405900 NA non-coding upstream 32407 14618649 ~ 14686310 (-)
G405901 NA non-coding upstream 33096 14619338 ~ 14654751 (-)
G405906 NA non-coding upstream 58611 14644853 ~ 14966111 (-)
G405909 NA non-coding upstream 101781 14688023 ~ 14720906 (-)
G405917 NA non-coding upstream 114026 14700268 ~ 14704312 (-)
tpbga LOC108272337 other downstream 72967 14475476 ~ 14479077 (-)
G405588 NA other downstream 432386 14114619 ~ 14119658 (-)
npy npy other downstream 468198 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 790487 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 993413 13556156 ~ 13558631 (-)
G405961 NA other upstream 381234 14967476 ~ 15013988 (-)

Expression


Co-expression Network