arid1ab (LOC108272722,LOC108415569)


Basic Information

Item Value
gene id arid1ab
gene name LOC108272722,LOC108415569
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14320865 ~ 14388466 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301478.1
AGTGAAAGTGTAGGAGTACAATGTTTCTCTGCCATGTTTGTTCTGTAGTCCGGATCCGCGCGCATGCTCAGCTCCACGCCTGCTGTTCCATGTGACTCTGCGCCTCGGTAAAATGGCTGTGTCTCGCGGAGCCTCGTGCTGGTCAGATCGGATTCTCGCTCCTgctctgctgctgtaacagagGCACTGTGCACACATTTTGTGTCAGTTCAATTCATTCCTGGGGTCCTCATTTATATCAATCACGAAACTTTTTAACTTAGAAACTGGAGAGAGGGCCGGGTCCGGTCTGGAGGTAGGGTGGGGAGGAATGATCCGGGACACAGGTACACTGgtaaaataattgtatttatatCCAGTGCTGTTCGGAGCTGTGGTGAGAAGTGACTCCTTTtaaaagagagggagatagagagagagcgagagagagagagagagagggagggagagagggaataATGGCCGCTCAGGTCGCTGCGCTCAGCACGAGCCCAGCCGCCGAACTGAAGAAAGCGGACAGAGACGCGCAGGAGGACTCGGTACCGGGAGACACGCAGCAGGAAAACAAGGACAACGGCGGCTCTCCCGGACAGAAAGAGCTGCAGGACGGCGCGGAGGTAGCTAATGCACCgggaggaggaaggagaggaggaggaggaggaggggaccCTGACATGAAAAACGGCAACGACAATTCGTCCCGGAtgaacaacagtaataataacaaccaGAACGATCTAGACGCTAACAGTCACCCGGGCATTGCTCATCAGCACCCGGGCGTTTTCCCTCCACCACCATACGGCTGCAGCCAGCACTACACCCGGGGCCCTTTTCATCAACATGGCGGACAACAAAGCCCTGGCATGGCACCGGTGCTGCCGGGCAGTGTAATGGAGCCCTATCCCACCAACTCGCACGATCACGGCTTCTCCAACCACTACAACAACTATGGGCCATTCCCAAATCGGACTCAGTATCCGGGCCAAGGTTATGGCATGAATTCCCCGCGCACTAACCCAGCGAGCCAGCCAgccaagcagcagcagcagcagcagccggGAGCAACTCTTATGGCGGGTTCGTATAATAATCAGAGGTATAACATGAGCAACCCTCAGCCGACCCCGACCCCAACTCTGAACCAGCTCCTGACCTCACCCTCCGCCAACAGAGGCTACCAGAATTACCCGCACAGTGACTATAACAGTCAGGACGGGACGGGGAAAGGAGCAGGGGACATGAGCAGCACTAATCACTACGCAGGGGGACATCCGCCCTGGCAACAAAGAGGCCATCACGCGCCCCCCATCAGCCCGGGCAACACCGCTCACGCGCTCAACAGGAACCAGACCCCAAGCCCAATGGACCAGGTGGGGAAGATCAGGGGCCAGCATTATGGAGCAGGAAACCCTTACTCTCAGCAGCAGGGGCCTCCACCAGGGGCCCAGCAAGGGCCTCCTTACCCTGGGCAAGGCTATGGCTCCCCAGGACCACAGAGATACCCAATGGGCATGCAGGGACGTGCTCCTGGAGCTATGGGAGGCATGCAGTATGGACAGCAGATGGGTTATGGACAGCAAGGCCCAGGAGCTTATGGCCAGAGCCAAGGAGGCTACTACGGTCAGCAGAACCCTCTTACTCCCCACGGAGGCCTTCAGCAGGGCTCATACCCTCAGCAGCATTCCAGTGGCCCCGGCTCCCAGCATCCATACTCCCAACCTCCGTCAGGTCCTCCTCTGTCCCAGGGTGGGGCTCCTTACTCCCAGCAACCCCAGGGCCAGTCTTCATACCCCCAGCCTCCACTTTCCCAGGCTGGCCAGACACCTTATCCCCAATCCCAGGCTCTTTCTCAGTCCCAGGGTACACCTCAGTCAGCTCAGGGCCCTCAGCAGCAGCCCGGATTCCCCCAAGCACCGCCTGGTTCCGGGCAGcctgctcctcctcctactcctactcagcagcagcaacaagGTGCAACGCAGCAGCAGCCCAGTGTAGGGCCTCCTCAGCAATCCCAGCAGCCCATGGGTCATGGTCCTTCTCCACAGGGGCACCAGCCCTCACCCTATTCACAAACCCCACCAACACAGCCGCAGCAGCAGACGCCCTTCCAGCGCTTCCCACCTCCACAGCAGGAGCTGTCCCAAGACTCATTCAGTTCCCATGCTTCCGGTCCTACCTCGAACCAGCCCCTGGCCTCCAGTAAGAGTGGTACCGAGGACAGCATGCAGGGCCGTCCTTCAAGTCTGCCGGACCTGGGCTCTATCGATGACCTGCCCACAGGCACGGAGGGAGCGCTGAGTCCGGGGGTCAGCACATCTGGTGTCTCCAGCAGTCAGGGCGAGCAGAGCAACCCAGCTCAGTCGCCTTTCTCCCCACACACCTCGCCTCACATGCCGGGCATCCGTGGGCCTTCGCCATCGCCCGTGGGCTCGCCCGCCAGTGCCACGCCTTCTCGCACTGGACCCCTTTCACCTGCTGgaAGTCAGATGCCTCCCAGACCTTCCAGTGTTCAGTCAGATGGAATCTTGCATTCTTCCATAAACCAGTCTGCTGTGGGCCAGGATAGAGTCTACATGCGGAACACACAGATGCCTCCTTACGGCTCTCCTCAGCCTGCTTCTGCCTTATCTCCACGCCCGCAGTCTGGAGGCCAAGTGCATGCTGGGATGGGTCATTATCCTCAAAACAACTCTATGGGCAATTATGGGCCACAGGGAGGACAGTACGTTCCTCAAGGCTACCCGAGGCAGCCAGGCTATGGTGGCATGCCTGGCCCTAACTATCCTGGTGGTCCAAGCATGGGCAGCCCTATGAATCCCATGTCAGGACAGGGAGGCGGGGGTGCGTATAGCGGTATGCCTCCTGGGCGCATGGGTCCAGGGCAGATGGGCTCAAGGCCATATGGTCCTGGCATGAGTCCCAACATGGGTGGCATACCACCTCAGGTGGCTTCAGGCATGTGCCCTCCACCTGGCATGAACAGAAAACCCCAAGATCCAACCTCAGCAGGCATGCACCATGGTCCGTCTAACTCGATACACAGGCCTCCTGGTTATCCCGGTATGACCCAGGGGATGGTGGGAGCTGGGTCTCCGTATGCACCGCCTATGAACAGCATGCATGGGATAATGAACCAGGCAGGGCCGTTCCCCATGGGAGGCAACGTGGCCAACAACTCAGCAGGAATGGCTCCTAGCCCAGAGTTTGGCATGGATAAGCTTAACCAAAACCAGAAGATGAATAATAAAGTCGATGGGACTCCAAAGACTGAATCAAAAAAGAAGTCAAATTCGTCCACCACcacaaatgagaaaataacTCGGCTATACGAGCTGGGTACTGAGCCAGACAGGAAGATGTGGGTGGACCGTTACCTGGCCTTTGCTGAGGAGAAAGCCATGGGCATGACCAACCTGCCTGCGGTGGGCCGTAAGCCTCTCGACCTCTTTCGTCTCTATGTCTCTGTTAAAGAGATTGGTGGCCTTACCCAGgtgaataagaataaaaagtgGAGGGAGTTAGCGACAAACCTGAATGTTGGGACCTCCAGTAGTGCAGCTAGCTCACTAAAGAAGCAGTACATCCAGTGTCTGTACGCCTTTGAGTGCAAGATTGAGCGTGGTGAGGACCCACCTCCAGATATTTTCAACAATGACTTAAAAAAGAACCAGGCGAAGGTACAGCCACCCTCTCCAGCGGGTTCAGGATCTTTACAGGGCCCTCAGACTCCACAGTCAACGAGCAGCTCTATGGCTGAAGGAAACGATCTGAAACCCCCTACCCCCGCGTCAACACCCCACAGCCAGATGCCCCCTATGCCTGGTGTGCGGAGCAATGTGAGTGTTCAAGACCCGTTCGCTGATGGTGGAGAGCCTGCCTTTGCTAGACGGAGCTCTCTGACACCTAACTCCACCTTCCAGCCCGGAATGGGGGGCCAACCTGATATAATGGGTCGTTTAGGTCCATATGAACCTAATAAGGACCCTTTTGGTGGTATGAGGAAAGCTGGTGAGCAGTTCATGAATCCAGGACAAGGCCCCAGCAGTGGAATGAGTGAGCAATATAACAGAGGCCCTCCTGGACCTATTGGTAACATGCAGTTAGGTCACAGACAGCAGTATGGACCATATGGACCAGGATATGACCGAAGACAAGAGCCAGGCATGAGTCCAGATGGCAGTATAGGTCCTGGAGCCCCACAGCCAAACACCATGCCCTCTGGTGCTGACACGGGGATGTATTCACCTaatccacagcagcagagGCATGATTCCTATGTTAATCAGTACCCTGCCCAAAGTGCACCCCCTAGTGGACAATACCCAAATCAGCAGCCTGGAATCTACCCACAGCAGCCGAATTACACACAGAAGAGGCCTGGAGATGGTGGTTATGGTCCCCCAGCAAAGCGTCATGATGGAGAAATGTATTCATTCAGTGGCCAGCAGCAACAGGGCCCTCAACCCTCAGGTGGCCCCCAACCCCAACAGGACATGTTCAACCAGTATAATGCCTACTCTGGCACAGATCGACGTCCACCTGGTCCACAGAGCCAATTCCCTTTCAGTTTTGGACGGGACAGGGGGCCTAATGCCGGAGGCTCTAACTCTCAGTCCTCCATGCCCCCGCAAATGATGGGCAGCCCCTTGCCATCTGTTCCTGATGGGCCCCAAGGTCCCATGTGGCAAGGCAGAAATGACATGAACTATCCCAACTATCCCAGTCGTCAGGGACCTCCCGGAGTTCCCACTCAAGGTCCAGGGTACCATGCAATGAACCGTTCTGAAGACATGTTACCTTCAGACCAGCGAATGAATCATGAAGGTCCATGGCCTGGTCATGTCAACCAGAGGCAGCCTCCTTATGGACCTGGTGGTTCTGGCCCACCCATGTCTAGAGCGCTGCAATCCAATTTTCAGTCCTCTCAAAATCACATTCCACAGGTATCAAGTCCAGCACCCATGCCAAGAACCATGGAGAACAGTACATCACCCAGCAAGTCCCCTTATATGCACACTGGGATAAAGATTCAGAAAGCTGGACCTCTAGTCCCAGCCTCGCACATAGCCCCAACACCAGTACAGCCTCCCGTGATAAGGAGAGACGTAGCCTTTCCATCAGGGTCTGTGGAGGCGACCCAGCCCATCCTCAAACCACGTCGCCGACTCATGATGAAAGATATTGgAACACCGGAAGCCTGGAGAGTCATGATGTCCCTCAAATCAGGATTGCTGGCAGAGAGCACTTGGGCTTTGGACACCATCAGTATTCTTCTGTATGATGATAACAGCATTTCTACCTTCAGTCTGTGTCAGCTTCCTGGCTTCCTTGAACTGATAGTGGAGTACTTCCGTAGATGCCTCATTGAAATTTTTGGCATCTTGAAAGAATATGAGGTCGGAGATCCTGGGCAGCGAACACTGATTGACCCAGATGCTCCTGACACTGATATGTCTGATGAAGAAAGCCCAGAAGTAGGGCAGATGGATGAAGAAGAGGACAAAGAGGAGAAGAATAGCCAACACATATCACAGATCCAAGTCAAGCATGAAAAGGATGAGCTTATGCATGACCAGAAATCCAGTGAAAAGtctgaagaagaaaaggaaggagaaATTTCTTCATCTAAAGAGCATGACTTATCCACTCCCATCCAGGACAGTAGTACAGTACAGGAAAAGCTCAAACAGGCTAGCAAATTTGACAAGCTTCCTATTAAGGTATTGTGGAAGAAAGACCCATTTGTCATTGGCCGTACTGGCAAATTGGGCCGGCGACAGACTTTTGACAGTGGGCTGATTCATTGGAGTGTTGGTGGAGGTGACACTACGGAGCACATCCAAACCCACTTTGAGAGCAAGATGGAGCTGCTAAAACCTCATAAACAGGTGCCTGTTAATACAAAGGCACCCATAACGAACCTGATTACTGAGAACAGAAATAAGAATGAGAGAAGCATACCACACCAGCAAAATGAGCAAACAGAGTCTCAGCCTTCCTCATGCCAACCATTGGAGGGGGAGAACACCACAGCTATTGCCAGTGCATCTGCTCCCATTATCGCCACTGTTGACGATGTGCTGTCTGGCTTGTCGGCATCAGTGGCTGAAGAATCTGTGCGGAATGGCGTGGAGGATgaggaaaagaagaacaaaTTTCTGTTTGGGATTGACACATCACAGCAGATCAGCAGCATTAAGATCCTTGAGGACGAGCCACACAGTAAGGATGAGTCCCCATTGTGCACATTGTCAGACTGGCAGGATGCACTAGCCCGCCGCTGCATATGCGTCTCTAACATCGTCCGCAGTCTCTCCTTCATCCCTGGCAATGACAGTGAAATGTCCAAACACCCAGGCCTGCTGCTTATCCTGGGCCGTGTGGTACTCCTGCACCACCGGCATCCTGAGCGCAAGGAGGCTCCTGTCACCtatgagaaagaggaagaggaggatgaaggagTCAGCTGTGAGCAAGATGAATGGTGGTGGGACTGTCTGGAGGTTCTGCGAGAAAACTGTCTGGTCACGTTGGCGAACATCTCAGGCCAGTTGGACCTGTCCATGTACCCCGAGAGTATCTGCCTGCCACTGCTGGATGGTCTTCTCCACTGGGCTGTCTGCCCCTCAGCAGAAGCCATTGATCCCTTCCCTACGCTTGGGCTTAATGGAGCAGTTTCCCCTCAGAGAATGGTTCTTGAGACTCTTAGCAAGCTCAGCATCCAGGACAATAATGTTGACCTCATTCTGGCCACCCCACCCTTCAGTCGCCTGGAGAAATTCTACAGTTCACTGGTACGCTTAATTGGTGACCGCAAGGTACCTGTGTGCCGGGAGATGGCAGTGGTGCTGTTGGCCAACCTGGCCCAGGGTGACAGCCTGGCAGCTCGGGCCATTGCCGTGCAGAAAGGCAGTATAGGGAACCTCCTGGGATTTCTGGAGGACAGTCTAGCAGCCACACAGTTCCAACAGAGCCAGGCTTCACTGCTGAATATGCAGGGGCAACACTTTGAACCCACTAGTGTGGACATGATGCGACGGGCTGCCCGTGCCCTGCATGCCCTTGCCAAAGTAGAGGAGAACCACTCCGAGTTCATGTTGTACGAGTCACGGCTACTGGACGTCTCTGTATCCCCCCTCCTGAACTCAGGAGTGTCCCACGTGATCTGTGATGTACTCTTTCTGATTGGCCAGTCATGACAGCTGTGGGGTTGAGCTTTGTCCCCCTTCTCCCTTTTAACCCCCTCGAATCTGTGTGAATGGAGAAATGTAACAGTGAAAACTGACtgtccttttttaatttatgcaaaAATCACCTCAAATTCCACTGATTGCTCTTTCTACCTTGCTTCTTTCTAAAGGAAGGATTTCACAAAGTGGATTTAACacgtaaataaaatgaagagaaaCTAATGTTGATACATGACTTATGACCTTGGGAGAGTGTGCTGCCATTTTGGAaggatgttttttaaattaaatgaaaagtagatttaaaaaaaaagaaaactaaccAAAGTTGCTGTCACATTTACAGTGAGTTTGGGGAATAAAGGTGCCCAGTGGTTTACTGGGCTGGCAGACACCGTTGTCTAGTTCTTGTTTGGAGGCTATACAGTTTCAGACTCTTGTTTGTGCTATAAATTGTAACTTGGATGATATATACACTGAGCCCAGGGACCAGGTCATTGGCTGTGAACAGACATCTGTAAATGGAAGGCCTGTACAGTAGATTGTATGACTTTTTGTACTGTACACCTTAAAGTGACAAGctgtaaacatactgtaataataatactgtttcACACTGAGATAATGCTGACTTGGCAGCAAAAACTgtagtttttaaaatgattttcgTTCTTATTtacagagaggggaaaaagacaTTCTTCCCCCAAAGTATCGTGTACAACACCCCGACCTCTTTGTCCCTTGATTGTATGACTTGACCCTCAAAGAAATCACCTCTTAGGACTGGTCTTGAGCTTCAGATGCAGTCCAGGCTGCAATGTAAATAATGATGTACAATACactttgctctttctctctctcaccttatTGCCCTCTTCACCATTTTTAATCTTTGATTAATTAAAGGTTACACTCAAGATCTCTTCA

Function

NR:

description
PREDICTED: AT-rich interactive domain-containing protein 1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301478.1 True 8126 mRNA 0.53 21 14320865 14388466

Neighbor

gene id symbol gene type direction distance location
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding downstream 102695 14195955 ~ 14218170 (-)
dazl dazl coding downstream 125399 14172834 ~ 14195466 (-)
mpp6b mpp6,LOC108272353,LOC107592011 coding downstream 152269 14139944 ~ 14168596 (-)
ccdc126 ccdc126 coding downstream 246690 14067317 ~ 14074175 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding downstream 274822 14016688 ~ 14046043 (-)
nudc nudc,LOC107689540,LOC107700719 coding upstream 52334 14440800 ~ 14452371 (-)
kdf1b LOC108273298 coding upstream 71926 14460392 ~ 14470818 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding upstream 93471 14481937 ~ 14491263 (-)
trnat-ugu_14 NA coding upstream 154751 14543217 ~ 14543289 (-)
trnat-ugu_15 NA coding upstream 157640 14546106 ~ 14546178 (-)
G405701 NA non-coding downstream 6031 14313739 ~ 14314834 (-)
LOC117596429 NA non-coding downstream 129110 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 243715 14076442 ~ 14077150 (-)
G405420 NA non-coding downstream 448437 13815898 ~ 13872428 (-)
G405419 NA non-coding downstream 505973 13808483 ~ 13814892 (-)
G405900 NA non-coding upstream 230183 14618649 ~ 14686310 (-)
G405901 NA non-coding upstream 230872 14619338 ~ 14654751 (-)
G405906 NA non-coding upstream 256387 14644853 ~ 14966111 (-)
G405909 NA non-coding upstream 299557 14688023 ~ 14720906 (-)
G405917 NA non-coding upstream 311802 14700268 ~ 14704312 (-)
G405588 NA other downstream 201207 14114619 ~ 14119658 (-)
npy npy other downstream 237019 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 559308 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 762234 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 776360 13542003 ~ 13544505 (-)
tpbga LOC108272337 other upstream 87010 14475476 ~ 14479077 (-)
G405961 NA other upstream 579010 14967476 ~ 15013988 (-)

Expression


Co-expression Network