aqp10b (LOC108272648,LOC108433769,LOC107599561)


Basic Information

Item Value
gene id aqp10b
gene name LOC108272648,LOC108433769,LOC107599561
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13575684 ~ 13586550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301479.1
cacacactttggcgCATGTAGGGTCTTAGACTTGGCTGACTACACGCAGGGTTCATTAGAAAGGGCTTTTTTTCTGTAGTGAGTTAATAAGTGCTGATTGAGCGTGTTTCATTTGAGCTGTGTGTAGTTGTGAACACACTGCTGCACTACACCGAATGAATTCTTGAAAACTATGAAACCAAATGTCTCATGAAACATGGACCGAGTATTAAAGAGATGCCAGATCAGCAGTCGCCTGGTTAGAGAATGTTTTGCTGAGTTTCTTGGAGTGTACATTTTAATACTGTTTGGCTGCGGCTCAGTCGCTCAGGTCACCACTTCAGAAAACAGCAAAGGAGAATACTTGTCAATCAATCTTGGATTTGCTTTGGGCACTACATTTGGAATCTATATTTCCAAAGGAGTATCAGGAGCTCACCTGAACCCCGCCGTGTCTCTCAGCCTATGTTTCCTGGGCAGGTTTCCCTGGATTCGGCTGCCATTCTACATCTTTTCACAGGTGTTCGGTGCCTTTCTGGCTGCAGCCACTGTTGCTTTGCAGTATTATGATGCCATAATCCATTACAGTGGTGGGCACTTTACAGTGAGCGGTCCCACTGCCACAGCAGGAATATTCTCCACTTACCCTGCAGATTACCTGAGTGTATGGGGAGGAGTAGTAGACCAGGTGATTGGTACAGCGGCCctgatggtgtgtgttctgGCTCTGGGTGACAGCCGTAACGTTCCTGCCCCTCCTGGTCTAGAACCTGTGCTGGTGGGAGCAGTAGTTATGGTAATCGGCGTCTCCATGGGTTCAAACAGCGGTTATGCCATCAACCCTGCGCGAGATATTGGCCCTCGGGTCTTCACCTTTATTGCCGGCTGGGGCGATGAGGTGTTCAGAGCTGGAGCTGGGTGGTGGTGGATCCCTTTGGTGGCCACTTGTGTAGGTGGCCTTGTCGGCTCTTTGATTTATGAGCTGCTGATTGCTGTTCACCATCCTGAACCAGAAGTTACCAAGACCGTCGACAACCTGCAGGACCTGGAACTGGAAGTGTCACAGAAAGAGTCTGAAAAACCCAATCAGATCAAAGTGATGCAGTAGCAAACCACATGAGGTTCTCTTCACCCCGATATATTGGGAAAAAGCTGCTTAGAAGTCTTTTATATGAATCCATACTTACATATCAGAGACCTAAATAACCACTAGTGAAGTAACTTAAAAGCTACTTTAAAGCTATGTGACACAAGCAAAGGTGTTTGCTTTGTAAAGGGAatgttagatttattttaaaataccatgcaaatttaaaaaaaaaaatcctacctTTTGAGTAGGTTTATTTGCAATGGGTTTGTTTggatgtacattttaatttcagtcaAACAGGAAGAACATCCCTGATCTTACTCGTGTAATCGAGTCAGTCCTGGCCTTCAAATGACTATTAGTTGTGGCACTGTTTCACTGACAGCCAGCTAATGTTcacaggaaaaatgggtaaCTAATTGTTAAACAAATGATTCTATgactaagactaataatagCACAGCACCATtaaattcttcattctgattggacagaatgTGTTGTTTAAATAACTGTacagcaaggcaaatcacaggtttatagtaatgcactcattctgataTGGTAAATGGTCTgcatttatatagcacctttttAACCTTAGCAGCTTTACACTgtttctcattcacacacacacagtgctagCCTGCCAACAGGATCAACTTGAGGTTCAGTATCTTGCCCAAGGACACTTTGGCACATGGAGGAGGATCAAACCACCGACCCTGTGCTTAGTGGACAACCCACACTACCACCTGATCCACAGCCAGCTCCCgtgtgttactgtttctatagtaaaaactaattcacagagacttgtacagcagacataATCGAAACATAATCTAACAAAGAGAAAattttgttgatatggtgaagctttctgtaaagagattttatttatcatttatgaaaGGAGGTTTGTAGTAGTCAGAGTTAAAGTTTTCTGCCAAGTGAAAATCTTCAGATTTTCAGAatctttccacaacattagatataactataaatggatgaatagTATGtggtagtgtttttttttaaataaataaatactgtaatcgGGCCTCATtgatcaatcttttagtaaagttgtgtgtaaatgtttatgtaagcCAAATCGAACTAAaattttctgccagatttacaaaggtTTCAGAAACGCTGATTATctttgtacttgtgtgtgtatgctgatgACCCATATCATGCAAAGTACGTTCCTGACACAGTTTATTTCCATgtagtgatgcccacaaaactgtataaaagtttgcaaaa

Function

NR:

description
PREDICTED: aquaporin-10-like

GO:

id name namespace
GO:0015793 glycerol transport biological_process
GO:0034219 carbohydrate transmembrane transport biological_process
GO:0071918 urea transmembrane transport biological_process
GO:0006833 water transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015168 glycerol transmembrane transporter activity molecular_function
GO:0015204 urea transmembrane transporter activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
K09878 AQP10; aquaporin-10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301479.1 True 2350 mRNA 0.42 6 13575684 13586550

Neighbor

gene id symbol gene type direction distance location
LOC113535306 NA coding downstream 26469 13548417 ~ 13549215 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding downstream 49584 13489949 ~ 13526100 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding downstream 132598 13409057 ~ 13443086 (-)
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding downstream 483938 13087487 ~ 13091746 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding downstream 629307 12937224 ~ 12946377 (-)
hax1 hax1 coding upstream 4489 13591039 ~ 13599620 (-)
ubap2l ubap2l,LOC107599491 coding upstream 16777 13603327 ~ 13638125 (-)
tuft1b LOC108272645 coding upstream 59717 13646267 ~ 13678291 (-)
cgnb LOC108272895 coding upstream 102572 13689122 ~ 13726155 (-)
pygo2 LOC108273220,LOC108433763,LOC103036475,LOC107693316,LOC107729895 coding upstream 142577 13729127 ~ 13734761 (-)
LOC113535067 NA non-coding downstream 11735 13559889 ~ 13563949 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 120887 13452399 ~ 13454797 (-)
G405144 NA non-coding downstream 208908 13366437 ~ 13366776 (-)
G405032 NA non-coding downstream 357204 13218279 ~ 13218480 (-)
G404997 NA non-coding downstream 435029 13140420 ~ 13140655 (-)
G405353 NA non-coding upstream 14477 13601027 ~ 13605892 (-)
G405368 NA non-coding upstream 68855 13655405 ~ 13706542 (-)
G405386 NA non-coding upstream 148986 13735536 ~ 13735748 (-)
G405419 NA non-coding upstream 221933 13808483 ~ 13814892 (-)
G405420 NA non-coding upstream 229348 13815898 ~ 13872428 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 17053 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 31179 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 182851 13389916 ~ 13392833 (-)
G404999 NA other downstream 434569 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 996033 12579580 ~ 12579651 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 173211 13759761 ~ 13761557 (-)
npy npy other upstream 494822 14081372 ~ 14083846 (-)
G405588 NA other upstream 528069 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 888926 14475476 ~ 14479077 (-)
G405961 NA other upstream 1380926 14967476 ~ 15013988 (-)

Expression


Co-expression Network