LOC113543852 (LOC108262220)


Basic Information

Item Value
gene id LOC113543852
gene name LOC108262220
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5268318 ~ 5276318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301480.1
acgctcgaccacgccccccACTGCCACATGACCGCTCCCTGCAATGTAGCTAATCAAAGCCCACTTCCTTTCTGTGAACGTGAATATCAGCAGGCACATGCAATAGTTCCTGATGTCACTTTAACCCTGACAGAGGGTAAGACTCGAAGGAAAAGTGCTAGTGAGGTAAGGAAATGgaaaacatttatgaaaatcGTGACGTCTCCAAAAGGAATGGTAGTGAAATCTGTCATTCTCCAACAGAAACAGCGGATAATGTTTATGCGAATACGAAGCAACAGTGTCCAAAGCCCAAAAAACGCACAGCTTCATCTCCATTTGGGTACAAGATCATCATATGTGCTCTTGGTCTCCTAATGCTTGGTGCTTTAGCATCACTCTGTGCTTTAGGGATCTTGTATCACAATAAAGTTGTTTCCACTGAGATATTAAGTGAGAAGTATGAGAATGCCACAGCCACACTGATGGTGCTAGGATACAAAGCCAAAGAAAAAGAGAGTATCTATGAAATGCAAAAGATGAAGCATCAGGAGCTCGTCTCTGCCTGCAACAagACAGAAAGACCGTATAAAGAACTGAAGGCAAAGCATCAGGAACTTGTCTCTGCATGCACTGagACACAACAGCTGTATAAAATGCTGAAGGAGAAGTATCAGCAAGTTCATGAACGTCTCTCTGCATGCAATGCAAATCAAAACTGCAGACACTGTGAGGAAGGATGGAAGTCTCTTGGTTTAAAGTGTTACAACTTCTCAACTAACAAACTGACCTGGACACAGAGTAGAGATTACTGTGTGGAGAAAGGAGGCCACCTGGTGATTATAACCAGCCAAACTGAACAGGATTTTGTATCTTCACAAATTGGAGAAACACACTGGATTGGCCTGAATGACCTGGAGACTGAGGGAAAGTGGATGTGGGTGAACAACCAGCCCTTAAAGACGGGTGTAACGTTCTGGTTTAGAGCTCCAGAGGGACCACGTGAGCCTGATAACTGGAAAAATGAGGACCCTTCTGGAGAGAACTGTGTCGCTCTGGGGGATGCAAATGGACCAAGAACAGAGGATCCTGATTATGTGAATATGCCGAAGTGGCGTCCAAAGCACGAAACATGCCCAGGTTCTGGTGTCACTGTCCAGAGGGCCTAAATGAGCCTGATAACTGGAAAACTGAGGACCCTTCTGGAGAGAACTGTGTCGCTCTGGGGCATGACAATGGTGACACACATAAATGGTTTGATGCTTCTTGTCGTACGCTGAAACAATTCATCTGTGAAAAGTAAAATACCGCTCTTTTCACTTGCATTTGTGCCTGCAAATACGTGTGTTTTTGAGAAACGAGGATAATTTTTGGCCATGCCACAGTTTGAGCCTGATTGATTGATATTCTAAAATAGCCAACATTAAATTTgcctatactttttttttaaataccaggTATCAAGGTAACCATTCACTTTTTGGACAAGAGTAAATCTTTTACATAATCcataacatttcacatttttttttcaacattttagaAGGTCTTGGATTTCAGACCTCTCTGCTTAAATggacagatgttttttttttatgtgattatCTAAGCTTGCGTAAACCTCTAGACCATTAGAAGATGGCATGAGATCATGTATGTAGATTTTCTCCCTCTGCCTTGTAGAAACTTCAACATTTAACAATATCTATTTAGAATAGTTTGACTATCATGAATCgccagtgttttatttccttgaaAACATGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301480.1 True 1745 mRNA 0.42 13 5268318 5276318

Neighbor

gene id symbol gene type direction distance location
LOC117596412 LOC108262220 coding downstream 5045 5258555 ~ 5263273 (-)
LOC113543750 NA coding downstream 10846 5251116 ~ 5257472 (-)
LOC113543693 LOC108273363,LOC108262220 coding downstream 36267 5229267 ~ 5232051 (-)
LOC113543887 LOC108262220 coding downstream 47061 5215000 ~ 5221257 (-)
si:dkeyp-92c9.2 LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595 coding downstream 55000 5209153 ~ 5213318 (-)
LOC113543899 NA coding upstream 4979 5281297 ~ 5285608 (-)
ptp4a3a ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245 coding upstream 13512 5289830 ~ 5317844 (-)
rims3 rims3,LOC107672861,LOC107702460,LOC107598211,LOC107731575,LOC107571463 coding upstream 42685 5319003 ~ 5381426 (-)
glcci1a glcci1,LOC108414387,LOC107672859 coding upstream 115204 5391522 ~ 5427603 (-)
umad1 umad1 coding upstream 152643 5428961 ~ 5442861 (-)
LOC113543905 NA non-coding downstream 26266 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 232396 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 255523 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 349435 4911350 ~ 4918883 (-)
G400503 NA non-coding downstream 384315 4881706 ~ 4884003 (-)
G400622 NA non-coding upstream 2585 5278903 ~ 5279314 (-)
G400676 NA non-coding upstream 94754 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 307237 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 535026 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 630829 5907147 ~ 5971174 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 127938 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 259854 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 633261 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 929891 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1108568 4150899 ~ 4159750 (-)
G400815 NA other upstream 311080 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 896670 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1095299 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1978115 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2593085 7869403 ~ 7917693 (-)

Expression


Co-expression Network