LOC117596412 (LOC108262220)


Basic Information

Item Value
gene id LOC117596412
gene name LOC108262220
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5258555 ~ 5263273 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301481.1
ATGGAGGTTAAGAGTCAAGTGTGAAGCACTAGTGAGGTCTGAAAATGCAAGCTGTCTATGAGGATATCAGTTTTGACCTCTGCAAAATGGATAGTAGTGAAAACTATCATTCTCCAACAGACATAGAGGATGATGTTTATGCGAATATACAGGACTGCCACACAAAGCCCAAAAAATGCACAGATATCTCTGAGCGCACTGAGCTGAAAGACAACAAGAAAACAGGAAAGATCTTCATATGTGCTGTTGGTCTCCTCCTAATGCTTGGTGGCGCTTTATCAGCACTCTGTGCTGTAGGGATCTTGTATCACAATAAAGTTGTCTCCTTTGAGATAATACATGAGCAGTACGAGAATGCTACAGCCACACTGATGATGCAAGAAGATAAAGTCAAGGAAAAAGATGTGAAGCATCAGGAGCTCGTCTCTGCATGCAATGAAACAGAAAGACTGTATGAAGTGCTGAAGGTGAAGTATAAGCAAGCTCATGACCATCTCTCTGCATGCAATGAAACAGAAAGACTGTATGAAGTGCTGAAGGTGAAGTATAAGCAAGCTCATGACCGTCTCTCTGCATGCAATGCAAATCAAAACAGCGGACACTGTGAGGAAGGATGGAAATCTCTTGGTTTAAAGTCTTATTACTTCTCCACTTTTAAGCTGACCTGGACACAGAGTAGAGATTACTGTGTGGAGAAAGGAGGCCATCTGGTGATTATAACCAGCCAGACTGAACAGGATTTTGTATCTTCACAAATTGGAGAAACACACTGGATTGGCCTGAATGACCTGGAGACTGAGGGAAAGTGGATGTGGGTGAACAACCGGCCCTTAAATGAGATGGGTATAACGTTCTGGTTTAGCGCTCCAGAGGGACCACATGAGCCTGATAACTGGAAAAATGAGGACCCTTCTGGAGAGAACTGTGCCGCTCTGGGGGATGCAAATGGTAACACACATAAATGGTTTGATGCTTCTTGTCGTAAGATAAAAAGGTGCATCTGTGAAAAGTAAAAGACTTCTCTTTTCACTTGCATTTGTCCCTGAAAATACTTGTTTTTTGGGGGgcttttttttgagaaagaagGATAATTTTTGGTTGTTGAGTCTAAATATTTGATATTGTGAAACAGTTAACATTAAATCTacctgtaatttatttttttaaacatgtagaCAACCagcttttaatttaaatacaagGTAACAATGCAGAAGTATGACAGAAGTAAATTTTTTACAGAATCTATTATGTTTCACTTTTCTTCGGCATTGTAAAAATGTCATTGTATTTTTAGCTTGTCTTAACCACTAGAAGATAGTATGAGGTGATGTATGTAGATTTTCTCCTGCTGCCTTATGGAAGTCTCTCAAATTGTAGTGGAGGGATGAACAATAACTTTCTTTCAAAAGTTATTCCCTCAGTTGGAATACCCCCAGAGTGTCACACAGCAacaggtttttcctttaatttgtcacccatctctATATACTTATGAATGAGGTGTGTCCATTTTATGTTAGCTAAAACTAGATAGAATGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301481.1 True 1545 mRNA 0.39 10 5258555 5263273

Neighbor

gene id symbol gene type direction distance location
LOC113543750 NA coding downstream 1083 5251116 ~ 5257472 (-)
LOC113543693 LOC108273363,LOC108262220 coding downstream 26504 5229267 ~ 5232051 (-)
LOC113543887 LOC108262220 coding downstream 37298 5215000 ~ 5221257 (-)
si:dkeyp-92c9.2 LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595 coding downstream 45237 5209153 ~ 5213318 (-)
LOC117596409 NA coding downstream 105947 5151088 ~ 5152608 (-)
LOC113543852 LOC108262220 coding upstream 5045 5268318 ~ 5276318 (-)
LOC113543899 NA coding upstream 18024 5281297 ~ 5285608 (-)
ptp4a3a ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245 coding upstream 26557 5289830 ~ 5317844 (-)
rims3 rims3,LOC107672861,LOC107702460,LOC107598211,LOC107731575,LOC107571463 coding upstream 55730 5319003 ~ 5381426 (-)
glcci1a glcci1,LOC108414387,LOC107672859 coding upstream 128249 5391522 ~ 5427603 (-)
LOC113543905 NA non-coding downstream 16503 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 222633 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 245760 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 339672 4911350 ~ 4918883 (-)
G400503 NA non-coding downstream 374552 4881706 ~ 4884003 (-)
G400622 NA non-coding upstream 15630 5278903 ~ 5279314 (-)
G400676 NA non-coding upstream 107799 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 320282 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 548071 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 643874 5907147 ~ 5971174 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 118175 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 250091 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 623498 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 920128 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1098805 4150899 ~ 4159750 (-)
G400815 NA other upstream 324125 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 909715 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1108344 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1991160 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2606130 7869403 ~ 7917693 (-)

Expression


Co-expression Network