LOC113543750


Basic Information

Item Value
gene id LOC113543750
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5251116 ~ 5257472 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301482.1
TTCCTGGTATCACAGACCTCAGTTTAAGTCTGTAATGTGAAGCACAGAttaggaaatggaaaaaaaaggcaattatCCAACAGGACCAAGAACAGAGGATCCTGATTATGTGAATATGCAGAACCGGtatccaaaacacaaaacatgccCAGATAGGTCTGAGCGCACTGAGCTTAAAGACAACAAGAAAACAGGAAAGATCATCATATGTGCTCTTGGTCTCGTCCTAATGCTTGGTGCTTTATCAGCACTCTGTGCTGTAGGGATCATTTATCACAATAAAGTGGTCTCCTATGAGATATTAAGTGAGCAGTATTCTAACGTTACAACAGCATTGATGATGCAGGAATGCAAAGCCAAGGAGATAGAAAGACTGTATGAAGCACTGAAGGTGGAGAATCAGCAAGTTCTTGGACGTCTTTCAGCATGCAATGCAAATCAAAACAGCGGACACTGTGAGGAAGGATGGAAGTCTCTTGGTTTAAAGTGTTACTACTTCTCAACTAACAAACTGACCTGGACACAGAGTAGAGATTACTGTGTGGAGAAAGGAGGCCACCTGGTGATTATAACCAGCCAAACTGAACAGGATTTTGTATCTTCacaaattaaagaaacacaCTGGATTGGCCTGAATGACCTGGAGACTGAGGGAAAGTGGATGTGGGTGAACAGTCGGCCCTTACATGAGACGGGTGTGACGTTCTGGTTTAGCGCTCCAGAGGGACCACATGAGCCTGATAACTGGAAAAATAAGGACCCTTCTGGAGAGAACTGCGCCGCTCTGGGGGATGGAAATGGTAACACCCACAAATGGTTTGATGCTTCTTGTCGTAAGACAAAAAGGTGCATCTGTGAAAAGTAAAAGACTTCTCTTTTCACTTGCATTTGTGCCTgaaaatacttgttttttttttgagaaaagagGATAATTTTTGGTTGTTGAGTCTAAATATTTGGTATTGTGAAACAGCTAACATTAAATCTacctgtaatttattttttaaacatgtacacaaccagctttaaatgtaaatacaatgtAACCGTGCACTTTTTTGACAGAagtatatttttacagaatCTATTATGTTTCACTTTTCTTTGGCATTGTAAAAATGTCATTGTATTTTTAGCTTGTCTTAACCACTAGAAGATGGTATGAGGTGATGTATGTACTTTTCTCCTGCTGCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301482.1 True 1196 mRNA 0.40 8 5251116 5257472

Neighbor

gene id symbol gene type direction distance location
LOC113543693 LOC108273363,LOC108262220 coding downstream 19065 5229267 ~ 5232051 (-)
LOC113543887 LOC108262220 coding downstream 29859 5215000 ~ 5221257 (-)
si:dkeyp-92c9.2 LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595 coding downstream 37798 5209153 ~ 5213318 (-)
LOC117596409 NA coding downstream 98508 5151088 ~ 5152608 (-)
LOC117596451 LOC108261350,LOC108261581 coding downstream 123679 5120270 ~ 5127437 (-)
LOC117596412 LOC108262220 coding upstream 1083 5258555 ~ 5263273 (-)
LOC113543852 LOC108262220 coding upstream 10846 5268318 ~ 5276318 (-)
LOC113543899 NA coding upstream 23825 5281297 ~ 5285608 (-)
ptp4a3a ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245 coding upstream 32358 5289830 ~ 5317844 (-)
rims3 rims3,LOC107672861,LOC107702460,LOC107598211,LOC107731575,LOC107571463 coding upstream 61531 5319003 ~ 5381426 (-)
LOC113543905 NA non-coding downstream 9064 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 215194 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 238321 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 332233 4911350 ~ 4918883 (-)
G400503 NA non-coding downstream 367113 4881706 ~ 4884003 (-)
G400622 NA non-coding upstream 21431 5278903 ~ 5279314 (-)
G400676 NA non-coding upstream 113600 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 326083 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 553872 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 649675 5907147 ~ 5971174 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 110736 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 242652 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 616059 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 912689 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1091366 4150899 ~ 4159750 (-)
G400815 NA other upstream 329926 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 915516 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1114145 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1996961 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2611931 7869403 ~ 7917693 (-)

Expression


Co-expression Network