chrna11 (si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611)


Basic Information

Item Value
gene id chrna11
gene name si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13489949 ~ 13526100 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301491.1
CCTTCCTCTCATCTCCTTCATACCTCACACAGgatttctcctcttcctctccttctcctcatTTTGGATCTGtttttcacactctctctctctctctctctgcgtctctGCGTTTCACACTTGGAATGTGGCACTCTTTGGTTTTGACTTTGTTTGGAATCTCCACTTTGGTCCAGgTTTCTGTTCAGGGCCCTTACCAGAGGACTCTGTTAAAAAACTTGTTAAAAGACTACAATCGTATGGAGCGGCCAGTAGCCAATGACTCACAGCCTCTCACAGTCGTCCTTACTCTCAGCTTGGTACAGATCATGGATGTGgatgAGAAAAATCAGGTTCTCACCACCAATATTTGGCTGAACATGCATTGGTATGATTATTATCTGCAGTGGAACCAATCAGAATATCCAGGAGTGAAGAATCTTAGATTCACCACTGACCAAATTTGGACCCCAGACATCCTGCTTTACAACAGTGCTGATGATGACTTTGATTCAACCTTTAAGACCAATGTGCTGGTGAATTCCAGCGGCTACTGCAGCTATCTGCCTCCAGGTATCTTCATGAGCACGTGTAATGTGGATGTTCGCTGGTTTCCTTTCGACATCCAGAAGTGTGAGTTGAAATTTGGCTCATGGACATTTGACGGGTGGCTCCTGGACCTTCAGATGAGTGAGGCTGATATTTCTGGCTACATGCCCAATGGAGAGTGGGACCTAGTGGGTGTGCCTGGCACAAGGAATGAGGTTTTCTATGACTGCTGTAAGGAGCCATACCCAGACGTGACATTTGTGGTAACCATCCGCAGACGAACACTCTACTACGCCCTGAACCTCCTCATTCCCTGCGTACTGCTCTCCTCCATGACCCTACTGATCTTTGTGCTGCCTGCCGACTCTGGAGAGAAGATCTCACTGGGTATTACAGTTCTGCTATCACTAACAGTCTTCATGTTACTGGTGGCAGAAATTATGCCTGCCACTTCTGACTCCATTCCACTCATAGGGCAGTACTTTGCTAGTATAATGATCATCGTTGGGATGTCAGTCATAGCGACTGTGGTTGTGCTACAATATCATCACCATGATCCAAATGGGGGAAATATGCCTAAATGGGTCCAGCTGGTTCTGCTCCAGTGGGTGGCCTGGTTTTTGCGCATGAAGCGCCCTGGTGAGTGTGAAGACCCTGAGCGTCCTCCATGTGCTCCCCATCTACGCCGTTGCTCTTCAGGCTCCCATACTGGCAGCCTTCCCAACACGGTTGACCATCACCAACACCACCATGTGCCTACCACGTTACACCCACTCCACCCCCAGAGCCTCTTGCAAGCAGCAGGCCATGTCAACCACCTGCCTTCACAGGGTAACAGTGCTAACAACAATGGCAACCTGCTCTACACTGGCTTCCCAAGCTTGGACGAAGCCTCGCCGCCTCCACTATTGGCCGACTCGGCCAACAGGAACAGCATATCAGGTGGTGTCACTCGACCGGGGTCTTCCAGCCCACCTCCCCACTTGCCCTCACATTTCAGCAGCCCGCCCCCTCCACCAACGCCAAACCTGGATGCCCCTGGATGCCCCAGTACGGTTTCGGGTGGTGCTGGTGGCTGTTCATGCTCAGCGGCCAGTGGCAGCGGAGGAGACCCACAGCTGCAGGCTATCCTGGATGAAGTGCGTTACATTGCTGAGCGTTTCAGAGCCCAGGACGAAAGCGACAGTGTAACAGAGCAGTGGAAGTTTGCAGGGGCTGTCATCGACCGTCTCTGCCTTGTGGCCTTCAGTGTCTTTAACATCATCTGCACCATCTCCATCCTCATGTCAGCACCCAACTTTGTCGAAGCTGTTTCCAAGGATTTCATTTGATGAGACACAAATGAATGCACAACGTGTAGATGCAGAAAAGTCTGTCTGTAACCAGGAAATATCTCAGATTGTGGGAAACATAAAGTGTATTCAACAAGAGACAGACATATGGACAGAACTGACAAATTGACCTCTTTGTGGCAATAGTATCTGGCCAAACATTAACCtcaaagagagggagagagaattgGAACTAAAATCTCATTCAGAAGGATGTAACATGGTCTTGTCATCATAGGACAGTACAAGATCACTGTGAAgtgtcaaaatatattttgagaatgtgcatgtttgtgtgttgtactgaatgaaacaaaaatggagCTGGTAACAGTGAGCAACAAAAGAGAGGGGGGAGGAGAGGCTCAGGATGTCTATGGAGTTGTGTGGGTGGTATTgactaaaaacagaaaatttgaGAAATCTTTAATAGAGAACAAAATGAGGATAAGGGTTTCTTTTCCCTATTTCCTTTTGATAGCACACAGAGGAGTGGGAAGCCTTTTTACTTTCTGCAGCAAAATACAATAGAGTAACGGGTAATAGATGAATACAGATGTTAGGAGAAGAATGCTCTTTAAACATACCAAGATACAGATCGATGGAGATAGTAAATCATCAATGAGGGAAGAGTGGATGGGAGGACAAAGGCAACGAAAGACAGCAAGAGtcaaagaagaaagaggaatgAGAGATGAACATGCGAGGTGAGGTGAGATGTGaagtgaacagtgtaggaaatCAAAACAATGATAGgggaaaaagtgagagagagaagtagaaACAAAACATGTTCCTGGCAGAGCTGGAATCCTGTTGTGGGAGAGATGTAAAATAGAGCATCTCACATCTTGAAACACAGCACAAAGATGCAACCTTCATTCAAAGGAAACAAAATAACAGACTAGACTTacataatgcataaataaagaaagattgATAGCTCTGAGACAAAGAGATGGGACACTGGAATGATTCCCTtgaaacacactgagaaatGGCACACAGGCACTGACGACACTTTTACAATCTTCCAGACATTTTATTCCCCAACATCACTGATGACAGATGGTGgtcgaaagaaaaaaaacaaaaacacttgcAGAATATTCAAGTCCACCCCCACAATTAATAAGAATTGTAACAAGCAAAACTAATTTAGTTGAATTTCATAAGAATGAAGCGTAAGAGACGCTACAACCACTACTCCCACCCATTACCCTCTTCTTAAACATTAGGAATATTTCATGCAGTTTGACTTTTTAAAGAAGACACCATGAGACCATACTGTCTATTCAGTAACTGCAGAACGGCAGTGGCCCCAATGCTGGACCAAATCCAGGATCCAGCATGCACTGTAGCTGTTGTATGGCTGAAAGCAGTGTGTTTTAAGAAGTAGGGATTTTCTCTAACACATTAATACAGCCAAGGCTGaacattgttttaatattttaagttaGGATATTTTCTACCATTTCCTTTTGTTTCCTTGAAGTTCCTATGCatacactttttaaactttCGATTAACATTTACTGGTggttatattttacacatttctcaaaCATTCAGTGGCACTTATTCATCAaagatattatgatattatg

Function

NR:

description
neuronal acetylcholine receptor subunit alpha-7-like

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301491.1 True 3466 mRNA 0.45 10 13489949 13526100

Neighbor

gene id symbol gene type direction distance location
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding downstream 46863 13409057 ~ 13443086 (-)
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding downstream 398203 13087487 ~ 13091746 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding downstream 543572 12937224 ~ 12946377 (-)
scamp3 scamp3,LOC106588184 coding downstream 563685 12915978 ~ 12926264 (-)
ash1l LOC108272684,LOC108437921,LOC106588182 coding downstream 589989 12860573 ~ 12899960 (-)
LOC113535306 NA coding upstream 22317 13548417 ~ 13549215 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding upstream 49584 13575684 ~ 13586550 (-)
hax1 hax1 coding upstream 64939 13591039 ~ 13599620 (-)
ubap2l ubap2l,LOC107599491 coding upstream 77227 13603327 ~ 13638125 (-)
tuft1b LOC108272645 coding upstream 120167 13646267 ~ 13678291 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 35152 13452399 ~ 13454797 (-)
G405144 NA non-coding downstream 123173 13366437 ~ 13366776 (-)
G405032 NA non-coding downstream 271469 13218279 ~ 13218480 (-)
G404997 NA non-coding downstream 349294 13140420 ~ 13140655 (-)
G404982 NA non-coding downstream 362293 13127399 ~ 13127656 (-)
LOC113535067 NA non-coding upstream 33789 13559889 ~ 13563949 (-)
G405353 NA non-coding upstream 74927 13601027 ~ 13605892 (-)
G405368 NA non-coding upstream 129305 13655405 ~ 13706542 (-)
G405386 NA non-coding upstream 209436 13735536 ~ 13735748 (-)
G405419 NA non-coding upstream 282383 13808483 ~ 13814892 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 97116 13389916 ~ 13392833 (-)
G404999 NA other downstream 348834 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 910298 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 911148 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 912289 12577588 ~ 12577660 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 15903 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 30056 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 233661 13759761 ~ 13761557 (-)
npy npy other upstream 555272 14081372 ~ 14083846 (-)
G405588 NA other upstream 588519 14114619 ~ 14119658 (-)

Expression


Co-expression Network