crabp2b (crabp2,crabp2b,LOC107656471)


Basic Information

Item Value
gene id crabp2b
gene name crabp2,crabp2b,LOC107656471
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12937224 ~ 12946377 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301498.1
gagagagagatacagattGCTGGGAAAAGAGGGACATCTGGAATTTTAACAGCGAACTCGTCTGGAGGAATAAATGAACATGAGCGACCAGGTAGCTGATTTTTCTGGAACCTGGAGAATGAAAAGCTCAGAAAACTTCGAGGAGCTGCTTAAAGCGCTTGgTGTAAATGTCTTTTTGAGGAAAATCGCAGTAGCAGCAGCATCCAGGCCCTCGGTTGAGATCAAGCAGCAGGGAGAGACTCTGTCGATACAGACATCCACCAGTGTTCGCACTACTCATGTGTCCTTCACCGTGGGCCAGATCTTCAACGAGACCACTGTAGATGGACGACCGTGCACGAGTTTTCCGAAATGGGACACTGACAGAAAGATCAGCTGTGAGCAGACACTGCTGAAAGGCGAGGGACCTCAGACATCCTGGTCTCGTGAGCTGACAGATAACGGGGAGCTCATACTAACTATGAGTGCTGGAGATGTTGTGTGTACCCGTGTCTATGAGCGAGAATGAGGGCTCTCACATTTTTGGTCTCCTACAGAACTTCAGTTAATCATTTATACTGTGGTACAAGTGTTCATCTTTAATGTTTGCTATCTACTATCGACTGCTATCAGTCTTTTGATATGTCCTTATTCATTACTGTATGTACAGCACCGTGAAAAAGTATTTCTTCTatgtttgcatatttgtcacactTAATTGTTTCAGATCCTCATCTAAACAGAATCTTTCCAGCAGTGTGAAGTAGGCTGAAAGGTCTCAACAAGCACATTACATGGCAATCAAAAGAAATTCcagaagagatgagaaagaaagttATTGAAATATATCAGCCTGGAGAGGGTTACATTTCTAAGGCTCGGGGACTCCACAACCACACTGAGAGCCATTATCTCCAAATGAAGAAAACTGAGAACAGTAGTGAATCTTCCCAGAAGTGGCTGATCTACTAAAATTCCTCCAAGAGCACATCAATGACTCATCAAGAAAGTCACAAAAGACCCCAGATGAACATCTAAAGAACTGCAGGCCTCGCTCTGCTCAGATAAGGTCCGCATTCATGATTCCATCAATAGAAAGAGATAGCAAGCAAAAATTCTATCCGTGGGAGAGTTGTAAGGCAAAAACCACTACTAACCAAGAGGAGCATAAA

Function

symbol description
crabp2b Predicted to enable lipid binding activity. Acts upstream of or within hindbrain morphogenesis and regulation of retinoic acid receptor signaling pathway. Is expressed in several structures, including eye; neural keel; neural plate; optic vesicle; and pectoral fin. Orthologous to human CRABP2 (cellular retinoic acid binding protein 2).
crabp2 Enables cyclin binding activity. Predicted to be involved in epidermis development; regulation of transcription, DNA-templated; and signal transduction. Predicted to act upstream of or within embryonic forelimb morphogenesis; positive regulation of collateral sprouting; and retinoic acid metabolic process. Located in cytosol and nucleoplasm.

NR:

description
cellular retinoic acid-binding protein 2-like

GO:

id name namespace
GO:0021575 hindbrain morphogenesis biological_process
GO:0006810 transport biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301498.1 True 1151 mRNA 0.44 4 12937224 12946377

Neighbor

gene id symbol gene type direction distance location
scamp3 scamp3,LOC106588184 coding downstream 10960 12915978 ~ 12926264 (-)
ash1l LOC108272684,LOC108437921,LOC106588182 coding downstream 37264 12860573 ~ 12899960 (-)
lrrc71 lrrc71 coding downstream 81732 12838204 ~ 12855492 (-)
setdb1a setdb1,LOC108272679,LOC106574954 coding downstream 101752 12816071 ~ 12835472 (-)
clk2a clk2,LOC108437923,LOC107724099,LOC107599513,LOC107656479,LOC107589405 coding downstream 123795 12795731 ~ 12813429 (-)
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding upstream 141110 13087487 ~ 13091746 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding upstream 462680 13409057 ~ 13443086 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding upstream 543572 13489949 ~ 13526100 (-)
LOC113535306 NA coding upstream 602040 13548417 ~ 13549215 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding upstream 629307 13575684 ~ 13586550 (-)
G404818 NA non-coding downstream 13279 12913941 ~ 12923945 (-)
G404719 NA non-coding downstream 250756 12686190 ~ 12686468 (-)
LOC113535190 NA non-coding downstream 259578 12663011 ~ 12677646 (-)
G404692 NA non-coding downstream 302011 12601632 ~ 12635213 (-)
G404687 NA non-coding downstream 345691 12589272 ~ 12591533 (-)
G404896 rprd2 non-coding upstream 37336 12983713 ~ 12984373 (-)
G404900 NA non-coding upstream 45824 12992201 ~ 12993258 (-)
G404904 NA non-coding upstream 52866 12999243 ~ 13002077 (-)
G404916 NA non-coding upstream 72216 13018593 ~ 13021304 (-)
G404899 NA non-coding upstream 76367 13022744 ~ 13025118 (-)
trnav-cac_26 NA other downstream 357573 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 358423 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 359564 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 360420 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 362409 12574740 ~ 12574815 (-)
G404999 NA other upstream 194317 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 443539 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 595626 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 609779 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 813384 13759761 ~ 13761557 (-)

Expression


Co-expression Network