mpp6b (mpp6,LOC108272353,LOC107592011)


Basic Information

Item Value
gene id mpp6b
gene name mpp6,LOC108272353,LOC107592011
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14139944 ~ 14168596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301504.1
CAGGTGAGGAGAAGACCTGCAAGCTACAGGTGAGGCAGAAGACCTGCAAGCTACAGAAGCGTCACGCTTAATTAACAGGACGCgttgcgcatgcgcactgctGATGCTACATCTGTGCAGGACAGCGGCAGGGCGCAGAGAGCTGAGGACCCGGTCAGCAGCCATGCAGCAAATGTTGGGTAACCTGAGGGAGTGGCCAACCTCCACTAAGGCTAATGACATTGACCTCATCTTCCTCAAAGGCATCATGGAAAGCCCTGTTGTCTGCTCTCTTGCCAAGattcATGAGCGTTTAGAGGATATGAAGCTGGAggcagtgcaggacaataatgTTGAACTAGTGAGTGAGATTCTAGGGGTAATTCGTGGGCTGACCATTAGAAACGACAGTGCTGCAGAGTTATCGAGAATACTTCAACAGCCTCACTTCCAGTCTCTCCTGGAGGCCCATGATATGGTGGCATCAAAATGCTATGAGATTCCGCCCCCCATCAAGCCGGCCACTGAAACAGCAGTCAACAATGCACTCATGCAAGCCGATGCTGTCAGAATGATCGGCATCCGCAAGAAAGCAGAAGAACCTCTGGGAGTCACATTCCGGGTGGATAAGGATGACCTGGTGATTGCTCGGATTCTCTACGGTGGGATCATTGACAGACAGGGCCTGCTCCATGTAGGTGACATCATAAAGGAAGTGAATGGACAGGAAGTGGGCAACAACCCCACAGAGCTACAGGAGATACTGAAGGACTGCAGTGGAGGAATCGCACTTAAAATCCTGCCGAGCTACATAGATTCGGCAATACCACCCCAGGTTTATGTAAAGCCACATTTTGACTACAATCCAGACAATGACAGTCTGATTCCATGCAGAGAGGCCGGACTCGCCTTCAACAGGGGTGACATTCTTCAGATAGTCAACAGAGAGGACCTGAACTGGTGGCAGGCATGTCATAAAGTAGGAGGGGCTACAGGGTTAATTCCCAGTCAGTTTCTGGAGGAGAAAAGGAAAGCTTTTGTTCCAAAGGACTTGGATAGAACAGGAATCTTGTGTGGAACAGTGAATggtaaaatgaagaaaaaaaggatgtaCCTGACTTCGAGGAATGCAGAATTTGACCATCACGAGCTGCAGATCTATGAGGAGGTAGTATGCATGCCACCATTCCAGAGGAGAACACTGGTTCTGATCGGAGCGCAGGGAGTCGGCCGTCGCAGCCTGAAAAACCGTCTGTTGGTGCTGCATCCTGACCGCTATGGAACCACAGTACCATTCACATCTCGAAGGCCTCGAGAGGACGAGCATGATGGTCACACTTACCAGTTTGTGACACAGATGGACATGGAGCGGGACATTAAATTGGGATGTTTCTTGGAGCACGGCGAGTATGATGGCAACCTGTATGGCACCAAGATCAGTTCTATTCATGAGGTAGCGAACACGGGACGCACCTGCATCCTGGACGTCAACCCCCAGGCTCTGAAGATGCTGAGAACAGCGGAGTTTATGCCCTATGTAGTGTTCATAGCGGCTCCTGAGTTCGAGACACTGAAAGCTATGCACAAAGCTGTCGTTGATGCAGGAATCACCACCAAACAGCTCACAGATGTGGATCTAAAGAAGAGAGTGGATGAGAGTGCATGCATTCAGAGGACATATAAACACTACTTTGACCTCACCATTGTGAGCGACAACCTGGACGCTGCATTTGAAACACTACAGGTGGCTTTGGACAAGCTTCGTTCTGAACCACAGTGGGTTCCTGTCAGCTGGGTTTACtaaaggtgtgagtgtgtgagctgtgcAGCTGTTAATATCGACTGTGTGTAGAAAATACAGTACTCCTTCTACTCAAAGGGAAGATGACCTAGTTTTATACTTGCACTTTTAggaaaaaattgtttttattccacattggaattaaaaaacaacaacaaaagataACCATAAAGATTTCCATATTGTTCCATTTTTGTTGCTTTATTTGTTTCTCTACTTGTATACTTGTGGTTTCCCCCAAACCAACTGTGATATTGTATTTCTACAATGCAGTGTTTAATAGATAAGGGCTGTAATGGAACACAGTGGCTGGATTTCCAGGAATCGTAGATTACTTGAAAAAGTGACTTCTCTTGGCCAAAACCACATGTAGGGCAGTGGCGGCTCTGGGTTACTGGTCTAAAggtcgggggttcaagccccaacACTGACAAGCTGCCGCTGTGCCCTTGAGTAAGACCCTTAACACTGTATCAttgctgaccctgcactctgaccccagcttactaacaagctgggatatgtgaagaaagagtttcactgtactgtaatgtaatgtaacaagGTTTCTATCTATTCTATTATGCATGAGGATTGAAAATTAGAAACATCTGTTGGTGTGTTTTGATGTGCCACGTATCCCTACTGTACACCTTCAAATCCCATAAGCAAAAGCAGTATCACTGAACACATACACTCTTATAGAGCCTATTTTATAACATACtgttaatttaatcattttgtgTCTCTGTTTAATTTTAACTAAATGTTTAGGTGCATATTGTTCTTTGTTAAGTTGAAGTTTTAGAGGTTATTTTGACACAGACCTCTATGAAAGCTAGTTCCACAGTATTTAGTGTGACATGTCAAGCcaaccttctctctctctctctctctctctctctctctctctctct
>XM_034301505.1
AGGAGAAGACCTGCAAGCTACAGGTGAGGCAGAAGACCTGCAAGCTACAGGACAGCGGCAGGGCGCAGAGAGCTGAGGACCCGGTCAGCAGGCGAGTTCACTTCCGTCAGTTTCAGATACACAAAGGAACAACGCAGTTACTATGGCAACGTTCGCTTTTGGACAAACCAGTTCCGCCATGCAGCAAATGTTGGGTAACCTGAGGGAGTGGCCAACCTCCACTAAGGCTAATGACATTGACCTCATCTTCCTCAAAGGCATCATGGAAAGCCCTGTTGTCTGCTCTCTTGCCAAGattcATGAGCGTTTAGAGGATATGAAGCTGGAggcagtgcaggacaataatgTTGAACTAGTGAGTGAGATTCTAGGGGTAATTCGTGGGCTGACCATTAGAAACGACAGTGCTGCAGAGTTATCGAGAATACTTCAACAGCCTCACTTCCAGTCTCTCCTGGAGGCCCATGATATGGTGGCATCAAAATGCTATGAGATTCCGCCCCCCATCAAGCCGGCCACTGAAACAGCAGTCAACAATGCACTCATGCAAGCCGATGCTGTCAGAATGATCGGCATCCGCAAGAAAGCAGAAGAACCTCTGGGAGTCACATTCCGGGTGGATAAGGATGACCTGGTGATTGCTCGGATTCTCTACGGTGGGATCATTGACAGACAGGGCCTGCTCCATGTAGGTGACATCATAAAGGAAGTGAATGGACAGGAAGTGGGCAACAACCCCACAGAGCTACAGGAGATACTGAAGGACTGCAGTGGAGGAATCGCACTTAAAATCCTGCCGAGCTACATAGATTCGGCAATACCACCCCAGGTTTATGTAAAGCCACATTTTGACTACAATCCAGACAATGACAGTCTGATTCCATGCAGAGAGGCCGGACTCGCCTTCAACAGGGGTGACATTCTTCAGATAGTCAACAGAGAGGACCTGAACTGGTGGCAGGCATGTCATAAAGTAGGAGGGGCTACAGGGTTAATTCCCAGTCAGTTTCTGGAGGAGAAAAGGAAAGCTTTTGTTCCAAAGGACTTGGATAGAACAGGAATCTTGTGTGGAACAGTGAATggtaaaatgaagaaaaaaaggatgtaCCTGACTTCGAGGAATGCAGAATTTGACCATCACGAGCTGCAGATCTATGAGGAGGTAGTATGCATGCCACCATTCCAGAGGAGAACACTGGTTCTGATCGGAGCGCAGGGAGTCGGCCGTCGCAGCCTGAAAAACCGTCTGTTGGTGCTGCATCCTGACCGCTATGGAACCACAGTACCATTCACATCTCGAAGGCCTCGAGAGGACGAGCATGATGGTCACACTTACCAGTTTGTGACACAGATGGACATGGAGCGGGACATTAAATTGGGATGTTTCTTGGAGCACGGCGAGTATGATGGCAACCTGTATGGCACCAAGATCAGTTCTATTCATGAGGTAGCGAACACGGGACGCACCTGCATCCTGGACGTCAACCCCCAGGCTCTGAAGATGCTGAGAACAGCGGAGTTTATGCCCTATGTAGTGTTCATAGCGGCTCCTGAGTTCGAGACACTGAAAGCTATGCACAAAGCTGTCGTTGATGCAGGAATCACCACCAAACAGCTCACAGATGTGGATCTAAAGAAGAGAGTGGATGAGAGTGCATGCATTCAGAGGACATATAAACACTACTTTGACCTCACCATTGTGAGCGACAACCTGGACGCTGCATTTGAAACACTACAGGTGGCTTTGGACAAGCTTCGTTCTGAACCACAGTGGGTTCCTGTCAGCTGGGTTTACtaaaggtgtgagtgtgtgagctgtgcAGCTGTTAATATCGACTGTGTGTAGAAAATACAGTACTCCTTCTACTCAAAGGGAAGATGACCTAGTTTTATACTTGCACTTTTAggaaaaaattgtttttattccacattggaattaaaaaacaacaacaaaagataACCATAAAGATTTCCATATTGTTCCATTTTTGTTGCTTTATTTGTTTCTCTACTTGTATACTTGTGGTTTCCCCCAAACCAACTGTGATATTGTATTTCTACAATGCAGTGTTTAATAGATAAGGGCTGTAATGGAACACAGTGGCTGGATTTCCAGGAATCGTAGATTACTTGAAAAAGTGACTTCTCTTGGCCAAAACCACATGTAGGGCAGTGGCGGCTCTGGGTTACTGGTCTAAAggtcgggggttcaagccccaacACTGACAAGCTGCCGCTGTGCCCTTGAGTAAGACCCTTAACACTGTATCAttgctgaccctgcactctgaccccagcttactaacaagctgggatatgtgaagaaagagtttcactgtactgtaatgtaatgtaacaagGTTTCTATCTATTCTATTATGCATGAGGATTGAAAATTAGAAACATCTGTTGGTGTGTTTTGATGTGCCACGTATCCCTACTGTACACCTTCAAATCCCATAAGCAAAAGCAGTATCACTGAACACATACACTCTTATAGAGCCTATTTTATAACATACtgttaatttaatcattttgtgTCTCTGTTTAATTTTAACTAAATGTTTAGGTGCATATTGTTCTTTGTTAAGTTGAAGTTTTAGAGGTTATTTTGACACAGACCTCTATGAAAGCTAGTTCCACAGTATTTAGTGTGACATGTCAAGCcaaccttctctctctctctctctctctctctctctctctctctct

Function

symbol description
mpp6 Predicted to be involved in maturation of 5.8S rRNA. Is expressed in organism. Orthologous to human MPHOSPH6 (M-phase phosphoprotein 6).

NR:

description
PREDICTED: MAGUK p55 subfamily member 6 isoform X1

GO: NA

KEGG:

id description
K24048 MPP2_6; MAGUK p55 subfamily member 2/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301504.1 False 2697 mRNA 0.46 13 14139944 14168596
XM_034301505.1 True 2712 mRNA 0.46 13 14139944 14168590

Neighbor

gene id symbol gene type direction distance location
ccdc126 ccdc126 coding downstream 65769 14067317 ~ 14074175 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding downstream 93901 14016688 ~ 14046043 (-)
oxnad1 oxnad1 coding downstream 139279 13925835 ~ 14000665 (-)
LOC113535216 LOC108272677,LOC108433755,LOC107727734,LOC103040142,LOC107754022,LOC107549876,LOC107563022,LOC107666341,LOC107665170 coding downstream 335356 13782962 ~ 13804588 (-)
pbxip1a LOC108273227 coding downstream 368411 13761655 ~ 13771533 (-)
dazl dazl coding upstream 4238 14172834 ~ 14195466 (-)
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding upstream 27359 14195955 ~ 14218170 (-)
arid1ab LOC108272722,LOC108415569 coding upstream 152269 14320865 ~ 14388466 (-)
nudc nudc,LOC107689540,LOC107700719 coding upstream 272204 14440800 ~ 14452371 (-)
kdf1b LOC108273298 coding upstream 291796 14460392 ~ 14470818 (-)
G405575 NA non-coding downstream 62794 14076442 ~ 14077150 (-)
G405420 NA non-coding downstream 267516 13815898 ~ 13872428 (-)
G405419 NA non-coding downstream 325052 13808483 ~ 13814892 (-)
G405386 NA non-coding downstream 404196 13735536 ~ 13735748 (-)
G405368 NA non-coding downstream 433402 13655405 ~ 13706542 (-)
LOC117596429 NA non-coding upstream 14890 14183486 ~ 14191755 (-)
G405681 NA non-coding upstream 87928 14256524 ~ 14329200 (-)
G405701 NA non-coding upstream 145143 14313739 ~ 14314834 (-)
G405707 NA non-coding upstream 210296 14378892 ~ 14385650 (-)
G405900 NA non-coding upstream 450053 14618649 ~ 14686310 (-)
G405588 NA other downstream 20286 14114619 ~ 14119658 (-)
npy npy other downstream 56098 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 378387 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 581313 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 595439 13542003 ~ 13544505 (-)
tpbga LOC108272337 other upstream 306880 14475476 ~ 14479077 (-)
G405961 NA other upstream 798880 14967476 ~ 15013988 (-)

Expression


Co-expression Network