si:dkey-14o18.2 (si:dkey-14o18.2,LOC108272430,LOC108439891,LOC107589391,LOC107693367,LOC107599522,LOC107724105)


Basic Information

Item Value
gene id si:dkey-14o18.2
gene name si:dkey-14o18.2,LOC108272430,LOC108439891,LOC107589391,LOC107693367,LOC107599522,LOC107724105
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12072924 ~ 12084163 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301514.1
CACTGAAGCTGAGATGAACTAGTCAGCTTGTGGCTCCATGGATTGACAACAGGAGTATACTGGTGGTGACACAGATTAACACGATCTGGAAATTGATTATCTGGATGCCAGACACAGGAGATCTAGTGTACCAAAGATTCAATCACTTtcatgtgggaaaaaataaaccaTGCCTACCTCTCCTCTATCATATTACAATACTGGATTGTGACACATGGACACATGGAACTCTGTCATGCTATTTTTGATGGATATATGACCTATCCAAGCACTTTTAACGAAAATAGCGACTGACTTCTAAACTGTCTTGAAATTTCCTGTGGACAAACACAGCATGTTGTAGTAGTTCAtctttttgtatgtttttgtgtatttgccaTTTCTCCATGACTTCTTTTCATACCACACTAATGATAAAGAAGCACAATGTTCACACATCAGCTggataaatacataataaaaactgGATAAAGGATAAAGACTGTACTTAATAATGGCTAAGGACACAAATATAGCCATTTGGCCTTTTCCATTGGTATTCTCAGACAATGGGCAAAGGGGTCGAATGTTTCGGGGACTTTGTTCTCTGCCTCTTCCACTCTATTCACTTCTTATCCTTTCAGTACTATCCTCAGTGGGACTTAGCAATGTACCAGGAGTAGAATATGATTGGGGAGCTCACCCCAAGTTAGTTTGCATGCCTCTACCTGCAGACACTGATCCAAGTTGTTTTCCCCCAGATGGGGTTACTCATGGACCTATTATTAATGGACATAACAATGGTCATGGCAATAGCCACAGTAACGGACATGGGAAGGGACATTTTGTTGGAGGCTTGCCTAACAGTCCTACCGGCAGCAGTAGTCGACGGGGCATATCTGATGAAGCAAAAGCTACAATTCTGCACTTGAGGGAAAGCCTAGTGCGTCAGAAGGAGACCATTCTGGATCAGAGGGAAACTATACGGGAGTTGACTGCAAAACTGACACTCTGTGAGGGCTTTGGGAGGGGTGCAAGTGGGCACCACAATGAAGACAACCATGGACATCATGGCTCTCACCACTCTTCACATCACTATGACAGTGACCGTCATTCTGATCCCCACTATCCTCTCAATGGGTACCACAATGACCATCACAGAGTAAAGCCACCATTTATGGGGAAACATGGATTTTCCCCTGAGCAGGCAGGGAAGACCTTGCAGGCTCtgaaagagaggctggagaaTTTACAGGCAAGGAATTCGTCTAGTACCTATTCAAGTTCACTGAAAGACCTTCTGCAGCGCAAAATTAATGCACTTGAAGAACAGCTCCACCGTCACCATGACAGTGACCATGACTATGGCACCCACGAATCCCACCCTGGGCATGGCCACCGTGATAATCACCATGATGACCACAGTGGAGATCACCATGATGACCATGATAACAACCGCCACTATGGTCATCATTACAGTCACTATTATGGCCATCATCAACTCAGCACACATGACAATGATAATGATAATCACCATGATGATCATCATAACAATCATAATGATGACCATCATGATGACCACCATGACAGCCACCAGAATGAACACCATGATGACCATCATTTTGACCCCCATGACAGTGATCACCACAGCAGCAATGATCATGGCCACCAGCGCCATAGCTCTCTTAAGCCAATAGCATCTAGAGCACGTGGTGCCTACAATAAGTTGGATTCTGTGCTGAGCCATCTGTATCACAGGCCCCCAGAAACAGaaaaccacAAGAGACCTAAAAATCCTGATGGCTTTCAAATTGGATTCCCCATGCACACTAACTACATGTATGGCCGGATCAAGCGCACTCTTCTCAATGAAATCTTTGCCCTAACTGTCTGCCTCTGGCTAAAGGGGGGTTCAGGCTCAGGGATAGGCACCCCTTTCTCTTACTCTGTTCCTGGCCAGGCTAATGAGCTTGTCTTGATTGAATGGGCCAACAGTCCAATAGAATTACTGGTGAATGACAAAGCTGTAACGCTACCCCTATCTCTGCAAGACAGAAAGTGGCACCATCTTTGTGTGACTTGGTCGACTCGAGATGGTGTATGGGAGGCCTATCAGAATGGAGTGAAAAGGGGTTCTGGGGAAAATCTATCCCCCTGGCATCCAATAAAACCAGGAGGAGTCTTTATACTGGGACAGGAGCAGGATACTCTTGGGGGCCGCTTTGATGCCACACAATCATTTGTTGGAGAAATGTCAGACCTACAGGTATGGTCACGTGTTCTTAACTCTCAAGAGATAGACAACCAAGCCTCCTGTTCCAGCCACCTCACTGGAGATGTTATCGCCTGGAGTGAGTCCATTGTGGAACTTCATGGAGGGGTTACCAAATATCCCTTTGACCCTTGTCACTAAAGGCCCAAGTGGGTTGCTGCTACTGCTTCTTAACCCTTAGAACCCCATGAACATAATTTGCAGGAATTTTCATAGGTATCTTGATGTCATAAATAAGAATCATTTATCATTTGGGAATAAGGCACACATTTTTTAGAAGCAGAAAGACTCTTTCCAAGCATCCTGGTTATGAAATACAGTATCAGTGAGGAATCTGTTTttgaaaatacatacatacatacatgttcAGCATTGTGTTCAAACTGCACATATTATCTCACAGTTTTTCCTCTTCAGATTAGAGAGAAAGCAAAGTTATTGTTTTTCAGAGATGTGGTCTTGACCTCACATCCATGCTTTCTAAGTGTCTTTAAAACTTGTCaaaatatctggaaaaaaagGGGTTCATTCTTTTAGCTCTAAAAATATATGTTACTTACactatcattatttatttccagCATTTTGtaaattctttgtttttgttctcaAAGGTTAAAAGGTCAATCTGCCATGTCAATCAAAATGAAGTCAGATGATGATGCATGCACACTAGCTCTATAAAGACCAGTTTTAAATtgcataaaaacacagaagactATAGTTGGACACCTGCTGGAGAGACATGTATAGCAATCAAGAAGacataagtaaataaaagaagTACATGAAGTATACTTAACTATACTCAAATGTATTTTTCAGTTTCAACAAACAGTATGATACTAAATTCCCATgtcattcagaaataaataaataaataaataaataaaaagatcagATCTCTGGATGAAACCAAGAGGAGACAATATCAACGAAAAATGTTTCAGTCTTACACTAATCATATATTATTTCACCATACCAAGCCATAGAGTGTTCTATCATCAAAGTTCATGTGTTCTTATAGAGTACAACAATTAgtttccagtccactaattttgATTGGATAAGTAGCATTATTTAGTATAACAAcactggtacatttcactgtttgtattaCTCTGTCTGTGTTCGATATAAAATTtgaattctagcaatagttcattACATTGACACTGTTACTACACTTCctatgggctgtcagtcagtctgtgcatGACAACACACAACGCTccatccagctgtggcttctctGGCAATTATTTTTGTTGACGGAACAAAAGTAAACTAAATATTTGGCCAtaatgtgtctgaaatgtcagttactcaatattcaTTTCTTGTCTATAGACCTAgaaaaagcaatattgcacaatATGCTTGTTCAGTATTGCTTAACTAGACCACAGTGACCTATTATTACCATCTGTACTGAAATAACTTTTTGATGTACATACAAAAAAGGTACTAATTTCAAGAAAagtaaaatagattttattgaTAACAATGGTAATAACAAAAATCGTTATGTCAGATCCACGTCAAATAATAGCACATCTGTGTAGCCAAGGATGTTTTGAAAAGAAATTGTAGTGTGTCTGAATGTCTGTAGTGATTGCAATGTTAGAGGCCTAGTTAAAGGACGtgaaaaatgcttaaaaacagTCTAGGGTTCTAAGGGTTAAGCAATAACcatacaaaattaaaacatgctgttaaatATTATCCCTGCGGTTCATTTGTTATGACAAAGGAAATTTGAAAgcaacaagacaatgaccaTTTGGATGATTGAATAAATGTTAGTAAGTGTCAAGGGAAGaaattttaaatgctttattagATCCTGAAGCAGCTCTTAGCAGCATAGCACAGTGAGAAAGATTTGGGgcctatttaaatgtattcaagtgtttcatacaaaaaataaacaacaaaaacctttattttgtcctgtaaataaattataatccaAGGTGCTCTTTTAGTCTGCTTCTCTCTTCAGGTTCAGGTGTAACTGCAGGGAAAAgcttagttttagttttttcaTACTTATGTAACATGCATCTGATCAGTTTTTCAACTAGTAATGTTTATGCATATATGTATGCGTGGCATGTGTTGATACTGTGTAATGTGGATAAACGTGAAactatttgtattttttcataCAAATGTTACATCTATATTTCATACCAATTTGCATTTGAATACTACAGGTAGGTGGGGGGTTGAAATGGCTCTGCATATGTACATGCAGCAAGCCAGGAGCTGCATGAGAATGCAGAGGTGTCCATGGCAACATAGCTTAAAGAAGGATTAAACAGACAAAGAGAACACTCTGATGTAGGCCTATTCTCTTAGAATGCAGAACATGCAATCTTCCtggcactctctctctctctctctctctctctctctctcacttcctcattcACACAAATACAGTGGTTGGTGAACAACTCTATATTGAGAGAACACATACTGTACCATGGAAAACCATCTAAATAGCTTTTGGTTTCTGTATAATACTGTTGTATTTTTATGAAACATGAATTTATTCTATTTATGCAAATGCTTTAGTAAATtatgttttgtaaaatgttgcagaaatgaaaaaatgccCAATGTACAGTA

Function

symbol description
si:dkey-14o18.2 Predicted to enable metal ion binding activity. Predicted to be located in extracellular region.

NR:

description
neuronal pentraxin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301514.1 True 4888 mRNA 0.39 6 12072924 12084163

Neighbor

gene id symbol gene type direction distance location
slc2a3a slc2a3a,LOC108273342,LOC108439890,LOC107739512,LOC107693366,LOC107724104,LOC107665492,LOC107589470 coding downstream 13529 12028221 ~ 12059395 (-)
LOC113535156 LOC108272362 coding downstream 68444 12001016 ~ 12004480 (-)
usf2 usf2,LOC108273297,LOC107739527,LOC107656615,LOC107724110,LOC107693382 coding downstream 76932 11983194 ~ 11995992 (-)
ago3b ago3b,LOC108272767,LOC103367052,LOC107379323,LOC108413244,LOC106605151,LOC100706402,LOC108444400,LOC103034630,LOC567622,LOC106582842 coding downstream 134503 11911671 ~ 11938421 (-)
lipea LOC108272659,LOC108444403 coding downstream 190415 11867632 ~ 11882509 (-)
cacng8a LOC108272562,LOC107724111,LOC107589386,LOC107739619,LOC107693368,LOC108439892,LOC107656603,LOC107599529,LOC103022608 coding upstream 23735 12107898 ~ 12119870 (-)
dbpa LOC108272905,LOC101068247 coding upstream 207579 12291742 ~ 12307057 (-)
znf865 znf865,LOC108272906,LOC108439897,LOC107724093,LOC107589382,LOC107599536,LOC107656606,LOC105902018 coding upstream 224632 12308795 ~ 12317891 (-)
shisa7b LOC108272955,LOC108439898 coding upstream 244995 12329158 ~ 12348572 (-)
cnot3b LOC108272956,LOC108439899,LOC107656608,LOC107739521,LOC107599539,LOC102215018 coding upstream 271079 12355242 ~ 12391362 (-)
G404243 NA non-coding downstream 72414 12000266 ~ 12000510 (-)
G404241 NA non-coding downstream 75454 11997070 ~ 11997470 (-)
G404235 NA non-coding downstream 101960 11970742 ~ 11970964 (-)
G404198 NA non-coding downstream 251498 11821050 ~ 11821426 (-)
G404060 NA non-coding downstream 307157 11763111 ~ 11765767 (-)
G404282 NA non-coding upstream 41294 12125457 ~ 12125840 (-)
G404421 NA non-coding upstream 191105 12275268 ~ 12275502 (-)
G404667 NA non-coding upstream 430308 12514471 ~ 12515210 (-)
G404681 NA non-coding upstream 490917 12575080 ~ 12577284 (-)
G404682 NA non-coding upstream 492369 12576532 ~ 12578806 (-)
si:ch73-347e22.4 NA other downstream 282745 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2656671 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2788431 9227395 ~ 9284493 (-)
G402673 NA other downstream 2911454 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 4155231 7869403 ~ 7917693 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 61435 12145598 ~ 12256372 (-)
G404644 NA other upstream 346832 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 431153 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 486301 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 487430 12571593 ~ 12571666 (-)

Expression


Co-expression Network