mief1 (mief1)


Basic Information

Item Value
gene id mief1
gene name mief1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1683598 ~ 1690681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301521.1
aaaaaaaagcgGGTGGTCACGTGGTATTGGTCTTCCGGTGCCGGAGCCGAGGCGAGTTAGCAGCTCCGCTTTGAAATAAAGGACAAAACGTTTTATAAACGTCCTTAAACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactccgCGAGCTCTCCCCGATGGGCGGCTGGTCCCGCGGCGCCGTGCTGGAGCTGTACCGAGCGCTGCTCCGCGCAGGGCGCCACCTGCAGTACACCGACCGCAACTACTACAGACGCGCCATCGCCCGCGAGTTCAGACGCTGCCAGTCGCTCAGCGAGGATCGAGAGAAAGAGGAGGCGCTGAAGAGGGGACAGTTCTTCCTCAACAGCCGTCTGGGAGGACTCGTCTAGACCAGAGCAGCATTAACGAGCAGCAGGATGGCGGGAGTGAACGGAGAtcggaaaggaaagaaagacgaCAACGGCCTCGGCTCAGCCATCGACTTCGTGCTCTCCAACGCCAAACTGGTGCTGGGGGTCGGAGGAGCCGCCATGCTGGGCATCGCTACACTCGCTGTGAAGAGAATGTACGACCGAGCCCTCAGCGCTCCCTCCAGCCCCACGAAATCCACCCAATCAGGAAAGAGGAGCTGGGAGGAGCCGAGCTGGCTGGGGTCGTCGCCGCGGACGCTGAACCGTGACATGAAGCAGAACGTCAGTCGGTCGCTGCAGACGCTCCCCACGTCCTCCAGCTCGTTTCAGCCCGattttCCACGGAAAACAGCAGGACgtcccagcagcagcagcaggagctgcAGTAAAGCGGCGCTGCAGCGGGGGCGGATGCGTCTGTCCCTGCAGGAGCACCTGTGGGCGTTCTATCACGAGCGCGTGAACATCTCGCCCGAGGAGCAGCAGGCAGCTCGACATGCCGCCCTCGACATCTGCGCAGAACTCCGAGCTTTCATCCACACCAAAGTGCCAGACATGCAGCTCCGAGACATGTACCTCAGCGGCAGCCTCTACCACGACCTGCAGGTGGTGTCGGCGGATCACGCTCAGCTGATGGTTCCTCTGATCCTGGAGAAGACTCTGTGGTCGTTTATCCCCGGTGAGGAGACCATCATGAACCTTCCCGGGTTCTGGCTCGTGCGGCGCGAGAACCTGGAGTACTTCCCCCGCGGCTGCAGCTTCTGGGACCGCTGCCTGATCGGCGGTTACCTCTCGCCGAAGAGCGTGCTGGAGGTGTTCGAGAAGCTGGTGACGGGGAGCATGAACTGGCCGGCGATCGGCAGCGTGCTGGGCTACGTGGTCCGTCCCGCCGTCCCGTCGCACACGGAGGCGCTCACGCTCTCTCTGGAGGTGCAGTACGACCCCGAGCGACGGCTCCACGTCGACTTCCTGCCTCTGCTCGTCTCCGAGGACGGCGCGTCCCTGATCGGCAAGCCGCACCGCGAGCGGGAGAACCTCTGGAGGCAGAGCTTTTGGTCGGCGGAGACGACGAAGCTGCTGACTCTGGACCGAGACGATAACGGCTGCCGCTGCGTCTGCCTGAAAATCGCCAAAGCCGTGTGCAAACTGAACCCGGCGCTGACGCCGCTGAACGCCAGCCACCTCGCCAACGCCGTGCTCCTGCTGAGCGAGAGCGAGCGCGACTGGAGCCGCGAGGCGCTGGCCGAGCGTTTCACGCAGCTCATCCGCGCGCTAGTGGGACACCTAGAGGCCGGGAGGCTGCCGTGCGCCCTGGACCCCAAGGTCAACCTGCTGTGCGAGCTCACGCCGCGAGAGGTCGACGAACTGGGgtacacactgtactgctcgcTCTCAGACCCCGAGAGCCTGCTCAGaactgtgtaacacacacacacacacacacactacacacacacacacacacacacactacacattacacacattatacacattatacacacacacaattaattaCACACAATGTAAAACTTGACATTGCTACCAAACTAGCTCGTGCACCAATGAATTGAataaggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaaagctAAAACATTCTgctgctaagattcatcagtgTTGAACAGGTCACCTCACTCACTGCTGTTTTCATTCATAAAgcagtgtaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcattcagtgTTGCTAATGTAAGCGAATGTGCTTGAGATCAAAACCCTGCCATTTGATTTGACGAATTCAACAATTGAAATAAAACGGCGCCGATGTTATAAAA

Function

symbol description
mief1 Predicted to enable nucleotide binding activity. Predicted to be involved in positive regulation of mitochondrial fission and positive regulation of protein targeting to membrane. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial outer membrane. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 49. Orthologous to several human genes including MIEF1 (mitochondrial elongation factor 1).

NR:

description
mitochondrial dynamics protein MID51

GO:

id name namespace
GO:0090314 positive regulation of protein targeting to membrane biological_process
GO:0090141 positive regulation of mitochondrial fission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K23507 MIEF1_2; mitochondrial dynamics protein MID51/49

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301521.1 True 2286 mRNA 0.58 6 1683598 1690681

Neighbor

gene id symbol gene type direction distance location
cbx7a LOC108273000,LOC103373459 coding downstream 34551 1639569 ~ 1649047 (-)
LOC113524072 LOC108272977,LOC108279536,LOC108280069,LOC108261210 coding downstream 144925 1522507 ~ 1538673 (-)
LOC117596456 LOC108272977,LOC108279574,LOC108280069,LOC108261293,LOC108261210 coding downstream 236545 1419889 ~ 1447053 (-)
LOC113524067 LOC108272977,LOC108280066,LOC108261293,LOC108261210 coding downstream 275834 1392428 ~ 1407764 (-)
LOC113524073 NA coding downstream 296124 1383691 ~ 1387474 (-)
LOC113524053 NA coding upstream 36220 1726901 ~ 1729117 (-)
LOC113524064 NA coding upstream 76023 1766704 ~ 1768749 (-)
LOC117596405 NA coding upstream 117841 1808522 ~ 1809853 (-)
LOC117596466 NA coding upstream 131002 1821683 ~ 1823769 (-)
LOC113524043 NA coding upstream 168201 1858882 ~ 1860957 (-)
G398730 NA non-coding downstream 3916 1677188 ~ 1679682 (-)
G398718 NA non-coding downstream 18107 1647700 ~ 1665491 (-)
G398689 NA non-coding downstream 22361 1658750 ~ 1661237 (-)
G398697 NA non-coding downstream 79612 1602236 ~ 1603986 (-)
G398686 NA non-coding downstream 104828 1566784 ~ 1578770 (-)
G398732 NA non-coding upstream 791 1691472 ~ 1691916 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding upstream 24355 1715036 ~ 1716463 (-)
G398751 NA non-coding upstream 35439 1726120 ~ 1726528 (-)
LOC117596467 NA non-coding upstream 184518 1875199 ~ 1876420 (-)
G398922 NA non-coding upstream 261240 1951921 ~ 1952184 (-)
st13 st13,f10a1 other downstream 91864 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 167284 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 221528 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 365962 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 729398 951202 ~ 954200 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other upstream 39409 1730090 ~ 1881058 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 664228 2354909 ~ 2377631 (-)
G399028 NA other upstream 681615 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 1271032 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1326609 3017290 ~ 3295273 (-)

Expression


Co-expression Network