rangap1a (rangap1,LOC107745514)


Basic Information

Item Value
gene id rangap1a
gene name rangap1,LOC107745514
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3927253 ~ 3937638 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301526.1
GCAGCTTTCAAACGCCATGACGTCATCCGAATGAGCGGGACGCCTCCgctggtgtgtgaatgtgtgcatgttgtTTTTCATTCCCACCCATTAAACCGGATTAAAAGTGTTCTGCAGgtgtagggATGGCGTCGGACGTGGTGGCCCAGCTGGCCGACTCTCTGGCCCGGACGCAGGTGGGAGAGGGAGAGCTGAGCTATAAGGGACAGGGCCTGAAGCTGGACAACGCTGAATCTGtggaggAGATAGTGAAGGCGATTCGGTTTGAGGGTTTACGCGCTCTGCGTTTGGAGGGAAACACATTCGGAGTGGAGGCAGCACAAGCCATCGCTAAGGCACTGGAGGACAAGCGAGATTTTCAGtgctGTTACTGGAGTGATATGTTCACGGGCCGCCTGCGTTCAGAGATCCCTCCTGCTCTGaCATCTCTGGGTGCAGCTCTAATATCCGCCGGCGCTCAGTTAAAGGTGCTGGATCTGAGCGATAACGCGTTCGGACCCGATGGCGTGAAAGGCATCGAGACGCTGCTGAAGAGCTCAGCGTGTCACACACTGCAAGAGCTGCGCCTTAACAACTGCGGGATGGGCATCGGGGGAGGAAAGATCCTGGCAGCGGCCCTGACACACTGCCATAAAGAGTCGAGTAAGCTCGGCGCCCCTCTGAGGCTGAAGATCTTCATCGCAGGACGGAACAGACTGGAGAACGACGGAGCCACGGCGCTGGCTCAGGCCTTTCAGTTGATCGGCAGTCTGGAGGAAGTCCACATGCCTCAGAACGGCATCAACCACCCCGGAGTGACGGCTCTGGCCAACGCCGTGCAGCACAACCCCCAGCTCCGAGTGCTCAACCTCAACGACAACACTTTCACCAAGAAAGGAGCCATCGCCATGGCGCAGgctctGAAGCACCTCCGCAGTGTGCAGGTGATAAACTTCGGTGACTGTTTGGTTCGCTCTGAGGGAGCCTTCGCTATTGCCGAGACTCTGAAAGATGGCCTTCCCATTCTCAAGGAGCTGAACCTGTCGTTTGGGGAGATCACAGGAGAGGCTGCTCTGGCTGTTGCAAAAGCAGTAAAGCACAAAGACCAGCTAGAGAAACTCGACCTCAATGgtaacTGTATTGGTGAGGAAGGGTGTGAGAACCTCCGGGAGCTCATGCAGAGCATGAACATGGACAACCTCCTGGCCTCTCTGAGTGATGACGAAGGAGAGCcagatgatgacgatgatgatgatggcgaagatgatgaagaggaggaggaggaggatgatgatgatgatgaggaggaggaggaagagaagggggaggatgaggaagaagatgatgaagatgatgatgaagaggaggaaaatGAGGAAGAGGGGGAAGATGAGCCCAGTGCAACCGAACAGaTATCGACTCCACCTTCAGCCCCTCGCCCTCCAGACGTCTCGTCCTTCCTCTGTTTCCCGTCTCCAGAGAAACTGCTGCGCCTCGGAGACCAGAGAGTCCAACTGATCCAGAAACAGgTGGATGTGACAGACGTGAGTAAGACTGTAGAGGCTTTTCTGAAGATCTCGTCTGTGTATAAGGAAGAGGATCTTGAGGTGAAAGCAGCGGTGTTGGACAGTGTTGATGCTGTTTTGAGTAAAGCCTTTTCCACGCCATCAGTCCAGACATTTAGTTTCATCTCTGCGTTACTGGTGATGCTTGGTcttttaaagagtgaGGATAAATTAAAACCCGTGGCAGTCGTACCAGGTCACCTGCAGTGTTTGGAGCATGCAGTGAAGCAGAAGTATTTTCCCAGAGAGCACATCGCTGTGCTGCAAGCTTTTTTGgccagACAAAACAAGTCCTTGGACTCATGCATCAGTGCTCGAGACAGCCTTCGTGCCACACTGCAGAGACTACTGCCCGAGAgctaaagacacacacacacacacacacacacacacacacacacacacacactgtggatgTTTCTCTGCTCCTGGCTGCTCATCTTTGTGTGTTGGACGATTAAAAGGACATTGTTTGGCAGCACCCCCTGCAGGACGATACAGGACTCATGGactaaagacagacagatggaaacacacacacacacacacacacacacacacacacacacactctcttcagTCCATCTCACACTCTGCCAtgcttcatttaattaattcagcTCAGCATGATCAATAAAACCGgtctatataaaaatacatcaaaaaataaaaactgctctTGTGA

Function

symbol description
rangap1 Enables GTPase activator activity; RNA binding activity; and small GTPase binding activity. Involved in activation of GTPase activity and negative regulation of protein export from nucleus. Located in several cellular components, including aggresome; nuclear membrane; and perinuclear region of cytoplasm. Colocalizes with kinetochore.

NR:

description
PREDICTED: ran GTPase-activating protein 1 isoform X1

GO: NA

KEGG:

id description
K14319 RANGAP1; Ran GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301526.1 True 2229 mRNA 0.52 17 3927253 3937638

Neighbor

gene id symbol gene type direction distance location
LOC113534792 LOC108272837 coding downstream 101749 3822746 ~ 3825504 (-)
si:ch211-106h11.3 LOC108272832,LOC108439110 coding downstream 117904 3794859 ~ 3809349 (-)
LOC113534607 LOC108272840 coding downstream 173133 3747482 ~ 3754120 (-)
ubn2b LOC108272810 coding downstream 326763 3585274 ~ 3600490 (-)
junbb LOC108272820 coding downstream 437086 3488273 ~ 3490167 (-)
LOC113534507 tob2,LOC107735623 coding upstream 55587 3993225 ~ 3999563 (-)
LOC113534503 pmm1,LOC107691086,LOC107672914 coding upstream 105407 4043045 ~ 4059491 (-)
LOC113534511 NA coding upstream 169238 4106876 ~ 4117916 (-)
LOC113534634 LOC108272825 coding upstream 196700 4134338 ~ 4144544 (-)
LOC117596393 LOC108272830 coding upstream 228686 4166324 ~ 4168560 (-)
G399913 NA non-coding downstream 9138 3916468 ~ 3918115 (-)
G399935 NA non-coding downstream 15906 3910640 ~ 3911347 (-)
G399929 NA non-coding downstream 39545 3885811 ~ 3887708 (-)
G399900 NA non-coding downstream 71623 3815612 ~ 3855630 (-)
G399909 NA non-coding downstream 86339 3840603 ~ 3840914 (-)
G399950 NA non-coding upstream 71429 4009067 ~ 4066280 (-)
G399990 NA non-coding upstream 162459 4100097 ~ 4106327 (-)
G400085 NA non-coding upstream 253103 4190741 ~ 4276482 (-)
G400112 LOC108272813 non-coding upstream 296765 4234403 ~ 4293157 (-)
G400131 NA non-coding upstream 343139 4280777 ~ 4281433 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 631980 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 692929 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 730690 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 963096 2961713 ~ 2964157 (-)
G399028 NA other downstream 1500647 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 182759 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 213261 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 357578 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 660162 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1023464 4961102 ~ 5008464 (-)

Expression


Co-expression Network