LOC113523961 (LOC108272987,LOC106591917)


Basic Information

Item Value
gene id LOC113523961
gene name LOC108272987,LOC106591917
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2914034 ~ 3079229 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301609.1
AGTGATTTCCTGCTGGATCTGTACTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCACTTCCTGCAGTCTGGTCCATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGAGAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGAATTTGATCCtaaacagggagagaaagaacaagaaaagaGATGGAGAACATTTAAACTGGATTTGTGTCTGCAAGCAGCTCTACACCAACCACAAAACATCCAGCAAACAGTGCAGAAAGTGATGCCTTATAATTATGAAGAACAGAGTGATTTCCTGCTGGATCTGTGCTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCAGCTCCTGCAGTCTGGTCCATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGAGAGACTGCTCAGGTGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGAGTTTGATTCAGACTCTGCATCCATCCGGTTTTTCCTGAATCTGAGCATCGCAGCAGTCGACTGTCAATCAGATAAAGGAGAGAGTTTTACTGAGCTGCTGGCGTCAGTGTGCAGCTACAGCACATTCCCTTTTGGTGATGAGTTTGATGAATTCCAAGAAGAACAGAGTGATTTCCTGCTGGATCTGTACTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCACTTCCTGCAGTCTGGTCCATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGAGAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGATTTTCACTTTACACATGGAGAGAAAGAACGAGAAAAGAGATGGAGAACATTTAAACTGGATTTGTGTCTGCAAGCAGTTCTACACCAACCACAAAACATCCAGCAAACGGTGCAGAAAGTGATCCCTTATAATTATGAAGAACAGAGTGATTTGCTGCTGGATCTGTACTCACGTGTGAAGCAGTATGAGAGTAACACAGGCAGGAGAGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCACTTCCTGCAGTCTGGTCCATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGATAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGAatataatTACAGGAAGCAAAAACATGTGGAGTTCCTGATGAGTCTCCTCCATCACACTACAGAaagtgacagacacacaggggGAAAATCACTGGAGCTGTTAACATCACTGTGCACTCACAGATCTTTTCCTTATGGACAAAACTCCATGTATAACAGTGATTTCCTGCTGGATCTGTGCTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCACTTCCTGCAGTCTGGTACATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAATTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGATAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGAGTTTGATTCAGACTCTGCATCCATCCGGTTTTTCCTGAATCTGAGCATCGCAGCAGTCGACTGTCAATCAGATAAAGGAGAGAGTTTTACTGAGCTGCTGGCGTCAGTGTGCAGCTACAGCACATTCCCTTTTGGTGATGAGTTTGATGAATTCCAAGAAGAACAGAGTGATTTCCTGCTGGATCTGTACTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCAGCTCCTGAAGTCTGGTACATAAATCTCTCAGAGAGAAAAGTCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGATAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGAGTTTTATTCAGGCTCTGCATCCATCCAGTTTTTGCTGAATCTGAGCATCGCAGCAGTCGACTGTCAATCAGATAAAGGAGAGAGTTTTATTGAGCTGCTGGCGTCAGTGTGCAGCTACAGCACATTCCCTTTTGGTGAAGAGGTTCATGGATTCCAAGAAAGACAGAGTGATTTGCTGCTGGATCTGTACTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCACTTCCTGCAGTCTGGTCCATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGAGAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGATGTGAAGAAAAGTTAATTCCACGTTTAAGTAAAGCAGTTGTTGACTACGCAGAAGATACAGAGCTGGTGAGAGCTTTCTTTGCTGCCATGGACTTCATCTTCATTATAGATTGGGTTTTAACCACTCGTGAGTGCAGGGCTGTGAGGAAAGTGCTGAATCTCTCAGACTCTAAACTCAAACTCACTCTGAAACCCTGGGCCATCTCTCTCCGAGGAGTGAGACTTCTCTTCAGACACATCACACACCTACAGAAACTCTGCCTGAGTGACCGTGTGGTAGGGAGGATGGTCCGAGCATTTCGAGCAGTGAGAGCCGGTGGCTCATTGGTCATTGAGGAGCTCTGTCTGGGCCTTAACAGCATAAAGCCAAAGAAAGAGATCTTCACATTTCTGAGCAGTTTGTCTTCCCTCCTGAACATCTGGACTGTTCACTGTGTGAACCTCACTGAGTGCAGGATGGAGGCTCACTCTCTCATCAGCCTCATGTGTCATCCTGGGAATTTAAATATCAGatTATCTAAAGCGACTCTCCAGCAGTTTACTGATCTGCTGTGTGAGGCGCAGGATGGGGAACTGACCCGCTTTTTCCTGGAGAAGGTGGGAGGTGACCTGACTTCCTGTTCTCTCAGTTGGGAGGAGCTTATCTATCTTCTCCAGCAGCAAGTTTGCCGCATTAGTGTGAACATCAGAAAGAGCAAAATCACATATAAACATGCCAGACAGATTCTTCCTCTACTGTCTGAAATTCAGTTTAAACGATTGAACCCTGGTGTTGTGCTGTCAATCATCAGAGAGATCTATGAGACTGGTTCTGCTCACTGTGTGTCCAGTCTGTTGAGATCAACACACAGCTGTATCAACCTGAACAATACAGAGCTGGACTCTTATCACTGTACTGCGCTGTGCTTCACCCTCCAACACtgcacatctgtctctctgagcCTGCTGTGGACCTCCATACCAGAGGGGGAGCTGGTGAAGATTCTGCCTCTGTTCAACAGAGTTTCTCAGCTCAGtgTTGACAGGCTCCTGTTGCTGAAGTTGCTCCACTGCTGCAGTATCTCTGAGCTCCAGCAGGGGGCAACAGCAGCAGTTGTCTTGGCTCTGCAGAACAGACTGGACTTCTCTTGTAGCACTGGTTTGGATCTGAGCACAGAAACACAGGATAACACTCTGCACCTGACCACTGAGGACTGTAGAGACATCAGCACTGCCATCTGGAAATCTCACCAACTTACAGAGCTCATTCTAGAGGACTGTGAGATGGAGGACACTGGAGTGGACATGTTCTTCCTCATTCTACATACTGTGAGACTGCGCTGTAGTAAACCTTTGTTGCTCCGGTTCCTGGATCTTCTCCATGTGGTGAATGAGTCAGACTGTGTGAGGCGTGTTATGTCCCTCTCCCAGGCtctggatggacagatggacctCAGTGAGACCCCTCTGGACCTCCATGCCTGTAGATCACTAGCGTTGTTTCTGGAATTTTCTGAAGGTCTGTCAGAACTGGACCTCAGCCACTGCCAGCTCGCTCATCACGGCCTGGAGCTGCTGTTCCCACACCTGCATAAAGCAGCTGTCCTGGACCTGAGTCACAATGACATAGATGATCCTCTAGCAGGAAGAATCTACACAGTTGTTTCCAGTAGCAGCAACATACAGACAGTTCGACTCTTCAGTAACAGAATTACTGATATAGAGCGTTTCCGAAAAGACAAGCGATTCGAGATCTGGTGATGACTGTGGACCAGTGTCCTGTTTTCACACTTCTCCCTAAACAGTACAAGGAGTAAAGACTGAAGCATAAACAGTCCTCATTATTATCTTTTCTTAATTctaattttattctattatttatttattggttttgTTATCCTGTccaattattttgaaatttcaTGGATTGTTAATAAGTtatgttaaatgaaaataaaatagacatGTTAGTATTTAAAATCACGTTTTGGGAAGCACCcagaaggaaaggaaacaatatttgttttcttttttctgaatattaatatttttttagctgttacaacattaaacatggaGCTGGACTTCACAATACACATCTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301609.1 True 4924 mRNA 0.46 15 2914034 3079229

Neighbor

gene id symbol gene type direction distance location
LOC113523971 LOC108272994 coding downstream 389855 2517791 ~ 2524179 (-)
cbx2 cbx2 coding downstream 406893 2498979 ~ 2507141 (-)
tmem100a tmem100 coding downstream 511873 2397416 ~ 2402161 (-)
tmem220 tmem220 coding downstream 902042 2008006 ~ 2011992 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding downstream 906757 2003622 ~ 2007277 (-)
si:ch211-108d22.2 LOC108272973 coding upstream 5 3079234 ~ 3112252 (-)
LOC113525116 LOC100526730,LOC108272815,LOC108280069,LOC108279574,LOC108280065 coding upstream 39106 3118335 ~ 3295290 (-)
trnay-gua_7 NA coding upstream 90105 3169334 ~ 3169421 (-)
LOC117595704 NA coding upstream 99288 3178517 ~ 3188087 (-)
jpt1b hn1 coding upstream 127679 3206908 ~ 3222780 (-)
G399348 NA non-coding downstream 11283 2898608 ~ 2902751 (-)
G399336 NA non-coding downstream 38958 2874842 ~ 2875076 (-)
G399332 NA non-coding downstream 49098 2864697 ~ 2864936 (-)
G399328 LOC108433502 non-coding downstream 53913 2859745 ~ 2860121 (-)
G399316 NA non-coding downstream 87987 2825832 ~ 2826047 (-)
G399532 NA non-coding upstream 88648 3167877 ~ 3168603 (-)
G399507 NA non-coding upstream 103743 3182972 ~ 3200751 (-)
G399537 NA non-coding upstream 106607 3185836 ~ 3194908 (-)
G399530 NA non-coding upstream 156414 3235643 ~ 3249326 (-)
G399541 NA non-coding upstream 164328 3243557 ~ 3245044 (-)
G399028 NA other downstream 487428 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 536403 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 1032976 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 1322300 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 1397720 1462119 ~ 1516314 (-)
LOC113525117 NA other upstream 68070 3147299 ~ 3196563 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 144836 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 1041168 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 1071670 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 1215987 4295216 ~ 4338427 (-)

Expression


Co-expression Network