LOC117595704


Basic Information

Item Value
gene id LOC117595704
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3178517 ~ 3188087 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301639.1
CCTTCTCTGGTCGAGGTGTTTTCCTTTTGCGTCACAGAGAATGACTGTGTTGTTCTTTCTCCTCTGCTTTCAGTTGCTTCTTGTTGGTGGTGTTATGactATTGTCATGGAGAAGAACATCACCTTGTCCTGCAAAAACATTTCTGCAGGAGATGGTTACACCTACCGAGTGTCACCTGATATATTGTCTGCCTTACTCCATGACGAGTACTGTGAGCAGGCATGGTACAGTGAGACTGGGGAATTTGTATCAGATGGACAACTTCATGCAAATCAGTCTAAGCACCATCTGGTTGTTGATgcaaacagagaaaatattaCAGTCTCTGAGTGCATCAAGCTTCAGCATCAGGTGACCTGTCATGGATCGAGTAAAGagTGGAAACACTTTTACCAAGTGAATAATGACACCAGCTCACCAGCTCCCATTACTGCACAGCAATCTCATCATCATCTCCGTCGTCATTCCCGTCATTCTGATTGGACTCCTGGTCTGGTGCTGCAAACAGCCAAGGCGGAGAGATGGAGTCAGAGATTGGTGCGTGGAGACCGGAGGAGATCTGAGTGTGGCCGCAGGCAACGAGCAGATGAGGAGAACCGcaTGAACCCTGGTGCTGTGAGAGCTAACGGCTGTGTGAACGGTGAAGAAGCTCAAGCACTCAAAGACAACGTCACTACAGATGATGAGTGAGGAGTCTCCGAGAGCGAGTGAGGATTACAGTGTCTACTTCTGCCGTTTCAAATCTGCACTTTATCTGTTTCTGCACTTCAGCATTTCTAAATCCTAAGACCTTGCAATTATAGAGCTGTAATTTTTCTGTAGGcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301639.1 True 826 mRNA 0.47 10 3178517 3188087

Neighbor

gene id symbol gene type direction distance location
trnay-gua_7 NA coding downstream 9096 3169334 ~ 3169421 (-)
si:ch211-108d22.2 LOC108272973 coding downstream 66265 3079234 ~ 3112252 (-)
LOC113523961 LOC108272987,LOC106591917 coding downstream 99288 2914034 ~ 3079229 (-)
LOC113523971 LOC108272994 coding downstream 654338 2517791 ~ 2524179 (-)
cbx2 cbx2 coding downstream 671376 2498979 ~ 2507141 (-)
jpt1b hn1 coding upstream 18821 3206908 ~ 3222780 (-)
LOC113534415 LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536 coding upstream 61999 3250086 ~ 3293868 (-)
gga3b gga3,LOC106606567 coding upstream 107832 3295919 ~ 3309397 (-)
trnae-cuc_42 NA coding upstream 123274 3311361 ~ 3311432 (-)
evplb LOC108272806 coding upstream 194027 3382114 ~ 3403530 (-)
G399532 NA non-coding downstream 9914 3167877 ~ 3168603 (-)
G399494 NA non-coding downstream 108249 3011867 ~ 3070268 (-)
G399491 NA non-coding downstream 132005 2957236 ~ 3046512 (-)
G399530 NA non-coding upstream 47556 3235643 ~ 3249326 (-)
G399541 NA non-coding upstream 55470 3243557 ~ 3245044 (-)
G399543 NA non-coding upstream 85469 3273556 ~ 3274842 (-)
LOC113534314 NA non-coding upstream 172584 3360671 ~ 3363611 (-)
LOC113534841 NA non-coding upstream 172795 3360882 ~ 3360954 (-)
G399490 nup85,LOC106601803 other downstream 214360 2961713 ~ 2964157 (-)
G399028 NA other downstream 751911 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 800886 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 1297459 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 1586783 1565795 ~ 1591734 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 35978 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 932310 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 962812 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 1107129 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 1409713 4597800 ~ 4635057 (-)

Expression


Co-expression Network