Item | Value |
---|---|
gene id | LOC113543744 |
gene name | fam46bb,LOC108273300,LOC108413340,LOC105903734,LOC107712594,LOC107700817,LOC107737782 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047623.1 |
NCBI id | CM018569.1 |
chromosome length | 15305753 |
location | 11384193 ~ 11397339 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_034301644.1 | True | 2198 | mRNA | 0.47 | 2 | 11384193 | 11397339 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC113543771 | oprd1a,LOC108272459,LOC108411271,LOC105903674,LOC107689567,LOC107732912,LOC107595906,LOC107688080 | coding | downstream | 109881 | 11243505 ~ 11274312 (-) |
stmn1a | stmn1,LOC108415666,LOC101477131,LOC102781761,LOC100709328 | coding | downstream | 387197 | 10991712 ~ 10996996 (-) |
cited4a | LOC108273161 | coding | downstream | 968475 | 10412385 ~ 10415718 (-) |
si:ch211-30b16.2 | si:ch211-30b16.2,LOC108273305,LOC108441689,LOC107569868,LOC107686956,LOC107719841,LOC107708724,LOC107693995 | coding | downstream | 1169312 | 10203813 ~ 10214881 (-) |
LOC113543865 | LOC108272957,LOC101471788,LOC102229941,LOC105937694 | coding | downstream | 1201427 | 10121543 ~ 10182766 (-) |
LOC113543901 | LOC108273294,LOC108413341,LOC107550656,LOC107737765,LOC107700701 | coding | upstream | 21814 | 11419153 ~ 11430318 (-) |
trnaa-ugc_19 | NA | coding | upstream | 43325 | 11440664 ~ 11440735 (-) |
trnap-ugg_24 | NA | coding | upstream | 44176 | 11441515 ~ 11441586 (-) |
LOC113543760 | grb10a,LOC108273075,LOC108440880,LOC107739542,LOC107667783,LOC107565574,LOC107656633 | coding | upstream | 51116 | 11448455 ~ 11498259 (-) |
LOC113543737 | NA | coding | upstream | 120591 | 11517930 ~ 11523343 (-) |
LOC117596437 | NA | non-coding | downstream | 21237 | 11327698 ~ 11362956 (-) |
LOC117596438 | NA | non-coding | downstream | 123802 | 11256791 ~ 11260391 (-) |
G403823 | NA | non-coding | downstream | 170355 | 11211886 ~ 11213838 (-) |
G403717 | LOC107675819,LOC107719741,LOC107739129,LOC107589765 | non-coding | downstream | 233014 | 11150807 ~ 11151179 (-) |
G403715 | NA | non-coding | downstream | 245067 | 11138782 ~ 11139126 (-) |
G403893 | NA | non-coding | upstream | 133954 | 11531293 ~ 11533016 (-) |
G403981 | tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886 | non-coding | upstream | 271424 | 11668763 ~ 11696191 (-) |
G403982 | NA | non-coding | upstream | 281916 | 11679255 ~ 11680996 (-) |
G404060 | NA | non-coding | upstream | 365772 | 11763111 ~ 11765767 (-) |
G404198 | NA | non-coding | upstream | 423711 | 11821050 ~ 11821426 (-) |
triqk | triqk,LOC107710222,LOC107724370,LOC107702072 | other | downstream | 1967940 | 9386995 ~ 9416253 (-) |
runx1t1 | runx1t1,LOC107702085,LOC107653844 | other | downstream | 2099700 | 9227395 ~ 9284493 (-) |
G402673 | NA | other | downstream | 2222723 | 9143870 ~ 9161470 (-) |
tmem64 | tmem64,LOC107696193,LOC107584320 | other | downstream | 3466500 | 7869403 ~ 7917693 (-) |
fndc5b | fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 | other | downstream | 4107411 | 7254433 ~ 7276782 (-) |
si:ch73-347e22.4 | NA | other | upstream | 380030 | 11777369 ~ 11790179 (-) |
grin2da | LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 | other | upstream | 748259 | 12145598 ~ 12256372 (-) |
G404644 | NA | other | upstream | 1033656 | 12430995 ~ 12483898 (-) |
fam131ba | fam131ba,LOC108272563,LOC108439905 | other | upstream | 1117977 | 12515316 ~ 12553760 (-) |
trnav-cac_22 | NA | other | upstream | 1173125 | 12570464 ~ 12570536 (-) |