cgnb (LOC108272895)


Basic Information

Item Value
gene id cgnb
gene name LOC108272895
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13689122 ~ 13726155 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301653.1
CGTGACGCCAGCGCAACAGGTTGTCGAGAGGGTTTTATTTAATTCCCGACGCTGGACTGTGTGATCTCTCCATCCttattttaaaagcagcatTTGCAGAACCACATGGTGAGCAGTAAGCGTGAAGCGGACCTGCCTCTGACTGTACAGCTGTGTGGAAGATTGGCGCAGCTTTGTTTAGTTTATAGGAGAACAGGACACTAATGTTTCCTCTCCACACTGCAGCAGTCTCAGCTCCATTCAGCGCTACATTCACTCCAGCTGGAGCTCAGCCCCTGCTTCCTCCTCAGAGCGCGTGTGTTCCGTGAGCCACAATGAATTCCCTCTCAGCAGATAGAAAGCCTCCAGTGGACCATGGTGTGCAGATCCGCTTCATCAAAGACCTGGATGATATGGGTGGAGGTTATGCAGAGAGGAGTCGAGGTGTTGGAGGAGCTGGAGCTGCTGGTGGCAGTGGCACTCCTGCATCCTCTACGTAtggtgttgcagtgagggttcAGGGCATTTCTGGACAGCCCTATGTGGTGCTGAAGGATGGAGAGAAGGGTGACTCATATGGAGTACGACTGAAGACCCAGCCTCAGCCACAGACCCCAATTCTTGGACTTTCGTCCCCATTTAAGAGCCTGCCTCCAAGACCACGCGATAGTCCACAGACTCCTAAAGTTCCTTACAGCTCACTTGGGCCACTAAGTTCACCAGAGGAAGAGACTGTTGAATTTGGGAGTCCTTTGAAGAGGCCACCTGGTGATGGGCAAGCAGGAAGTCaaggagatggagaaagagggaCTACAGAAAATCCTGTATCTGCTCCTTCATCCAAAGACTCTGAGAAGAAAGACTTGGGAGAGCTGAATGAAGCTGGTCTTAGGCCAGTGCGGCAGACTGGAATTGGTGGAACTGTGAATGGGACAGGGAAAAGAGGGAATCAGTATACCTCTACAGAGCCATTCCCTGGAGCTTCAGCACCTGGTACTGTTGAGGAAAAGCCAGTTGAAGCCATCGACACAAAATCTTTAGCACCCATTAATAAACTTATCAGTAAATTTAATGGCAGTGCCACCTCCACCATGCCAAGCCGGATCAGAGGCCGCTCTCGAGCACGAGCATGTCTACAGTTTGACGAGCGAAAGCGTTCTCACAGCTTGGATGCTCGCAAGGAACAGGAAGAAGAGCCTCCTCCCTCACCAACCATAAACCCCTACGCTCCTACAGTAAACACCAGCTCAAGCTCCAGTCTTACCTCACCCAAACATACAACCTACAACAGTCTTGGACAGAGCTCTCCTTCCATCGCAAAGGTGCCCGCTGTTCCTACTTCAAAGGCACCTACCATTAATCAAACTCCACGGATGTTTGTTGCCAAGGAAGTGCCATCTACTATATCAAAGAAACAGGTAACTCCTGATCTTCTGAGTAGCCGAAGTCAAAGTACAGATTCCATTAATGGAGGtgaagctgaagaaaaacaggtGATCTATGAAGTCCTCAGAGAAGGGTCTGCTGAGAGTGAGACGTCCCTGAGGCGAAAAGCAAATCTCATTCATGAGCGGTACAGAGGGCTGAAGGAGGAGAACGAGGCAACAGACAATCGCTTACAGCAGCAGCTCGATCAGACCAAGAGAGAATTGCAGCATGCCCAGGATCGATTGGTGGAGCTTCGCTTGGAGAAGGAAGGGGTGGAGTCTCGCTTTCACCAGCAGGAGGATCAGCTGGCTCAGCTACAGGAGGAGCTGAGGAGAGTATCGGAGAGCACACCTCAAACAGACTCAATGCACATGGACCTGGTGACGCTTCAGACTGAGCTGGCTGAGGCGGTGATGCTGAGGCAGAAGCAGGAGGAGATGCTGCACATGAGGGAGAGGGAGCTCACTGCCCTGAAGGGGGCACTAAAGGACGAGGTGGCCGCCCACGACAGAGAGATGGAGGCACTCAGAGAACAGTACGGCCGAAATATGGAGGCACTTCAAAAAAGCATGGAGCATGtatcacagTCCCAGCAGGAGATAGAGGAAGAGCGGCAGAAAGTGAACGCCTCGATTCTGGCTCTGGAAGACGAGCTGGACAGTTACAGGGAGCAGGGCGAGCACTGGAAGGAGCAGATGACCTCAGTCAAACAGGAGCACGGGCCGCACAGCACGTTTCAAAAACTGCTGCAGGCTCAGCAGGAAAAGAAGGAACTTGAGGAGAAACTGCTCAGCGTGAAGAAGCAGACTTGTGAAACAGACTCGCGCTCTTTCACTCAGGTTCAGGAGCTGCAGCGATGTCAAGATGATCTTAAACAGGCACGTCTGAAAATAGATGAGCAGAAAGCCGAGTTggtgaagaaggaggaggagctcCAGTCTCTGAAAAGAACCAGTCAAAACAAAGAACAGGAGCTTGAGGCTGAGATTGACAAACTGAAGGACCAGTCAAAGAAGGACAAAGAGGAGCATTCCAAAGTGCTTGAGAAGATGCAACAgTCTTTAGTATCGTCTCAGGATCCTACCAAAGACAGTGCTTTGGACCTTCAGGAGGCTAACACTCGCCTTAGAGAGAGAATTGCCCGCATGTCCCGGCTGCACACCAGTCTGCCCGACAGTGGGGCTTCAGATGCCCTGGAGGAGGAGAACCGGTACCTGAAGACGCAGCTGGAGGAAGCGCGGCGTGCAGCATCCCGCCTCAGCCACGAGAAAGAGGAACTCAGCCGCCAActggaggaaaaagaaaaagagagagaaattctgCGCCATGCCAAAGCAGACCTTGAAGAGCAGAAGAGGCTGCTTGACCGAGCACTGGAGAAGATGAACAAAGAGATAGACCTGATGATGGGTGATTCTCGGCAGTCTGTGCAGAATCTGCAGTCTCAGCTGGATGAGTTTAGAGATCGGTCTCGTAGAGAGCTTCAGGAATCTCAGAGACTAAACAAGGACCGACTGGTTGAGCTGCAAAGAACGCAGAACAACCTCAAAGCAGCACAGGAAGAGGTGTCGCGTCTAAAGAAGGAACTGCTGGTATGTTCTGAGGAGAGGGATAGTGCTCAGCTGGATAAGGAGCTACTGAGCAGCCGTCTCAGACAAAAGGAGAGTGAGCTGGACAGTGAGAGGACCTCGCAGACAGACCGCAGCAGAGACGGCttctagaggtgtgtgtgtGATAAAGTAAAGGCTTTGGAGATAGAATTGGATGAGGAAAAGACTGGAGCAGAGCTTCTGAACGAGCGCATGACACGCAGCCGAGAGCAGgTGGACCAACTCCGCTCTGAACTGATGCAAGAGCGCTCAGCCAGACATGACCTTGAGATGGACAAGAGCTCAGTGGAGAGACAGgtAAAAGAGCTGAAGTCTCGTTTAGCTGATATGGAAGGTCAGCCTCGATCTACTGCAGGAGTCACCATACTGGAAAGCAAAATTCAGGAGCTGGAAGATCGGTTACACAGCGAGGAAAGAGAGAAGAGCAGCATTCTAGCAGCCCAGAGGAGGACGGAGAGGAAATTAAAGGATGTCAATGTCACACTGGACCAGGAGAGAAACCAGCATGCTGAACAGCGAGACCAGCTCTCTCTGCGTGTGAAGGCACTGAAGAGGCAGCTGGATGATAGTGAAGGAGAGGTGGAGAGATTGGAGGGAGTGAGGCGGAAGATTCTGAGGGATctggaggagcagcaggagctGAAGGACGTGCTGCAGGCCAAAGTCACTGCGCTGGAAAACGAGCTGAGGAGGAAGATTCAGCAGACGCGGCGTCCCACGCTGGGGTCCACTCTAAGctcagaggaggaggatggatGCTTTGATTCTAACAGCATCACGTCCATCCTGACAGAATCACAGCTACAGACCACCACCTGCTGAAGAGAGCGTGAAGAGTGAAACGGAAAACATGagaactgtgtttatatatctCATTCTACTGAAAGATAATCGATGATTCATATGAAGCATATCAGTTAATGAATGCCTTAATTCTGTACGGGAAACACAAAGTGCCTGAAAGTTCTAGTTTGAAAAGTTGCTAAGtgatgaaaagagaaaactctTAGTGCTTAAACCTTTATAAAACAATtcctttttaaatgaagagttaAGTAGATTAGTGTAATTCAGAAATCTGTACTGTCCTTTTTACTGTATAACTGGCTATATGTTTAATCTTGACTAGTTATATAAAGATTCTTTCTTTCCAATTCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030054 cell junction cellular_component

KEGG:

id description
K06102 CGN; cingulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301653.1 True 4175 mRNA 0.50 21 13689122 13726155

Neighbor

gene id symbol gene type direction distance location
tuft1b LOC108272645 coding downstream 10831 13646267 ~ 13678291 (-)
ubap2l ubap2l,LOC107599491 coding downstream 50997 13603327 ~ 13638125 (-)
hax1 hax1 coding downstream 89502 13591039 ~ 13599620 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding downstream 102572 13575684 ~ 13586550 (-)
LOC113535306 NA coding downstream 139907 13548417 ~ 13549215 (-)
pygo2 LOC108273220,LOC108433763,LOC103036475,LOC107693316,LOC107729895 coding upstream 2972 13729127 ~ 13734761 (-)
s100s s100s,LOC108272970,LOC108433762,LOC103039105,LOC107716593,LOC107670010,LOC107559723 coding upstream 20723 13746878 ~ 13750502 (-)
s100u LOC108272971,LOC108433761 coding upstream 26658 13752813 ~ 13758428 (-)
pbxip1a LOC108273227 coding upstream 35500 13761655 ~ 13771533 (-)
LOC113535216 LOC108272677,LOC108433755,LOC107727734,LOC103040142,LOC107754022,LOC107549876,LOC107563022,LOC107666341,LOC107665170 coding upstream 56807 13782962 ~ 13804588 (-)
G405353 NA non-coding downstream 83230 13601027 ~ 13605892 (-)
LOC113535067 NA non-coding downstream 125173 13559889 ~ 13563949 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 234325 13452399 ~ 13454797 (-)
G405144 NA non-coding downstream 322346 13366437 ~ 13366776 (-)
G405032 NA non-coding downstream 470642 13218279 ~ 13218480 (-)
G405386 NA non-coding upstream 9381 13735536 ~ 13735748 (-)
G405419 NA non-coding upstream 82328 13808483 ~ 13814892 (-)
G405420 NA non-coding upstream 89743 13815898 ~ 13872428 (-)
G405575 NA non-coding upstream 350287 14076442 ~ 14077150 (-)
LOC117596429 NA non-coding upstream 457331 14183486 ~ 14191755 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 130491 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 144617 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 296289 13389916 ~ 13392833 (-)
G404999 NA other downstream 548007 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 1109471 12579580 ~ 12579651 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 33606 13759761 ~ 13761557 (-)
npy npy other upstream 355217 14081372 ~ 14083846 (-)
G405588 NA other upstream 388464 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 749321 14475476 ~ 14479077 (-)
G405961 NA other upstream 1241321 14967476 ~ 15013988 (-)

Expression


Co-expression Network