si:ch211-81a5.8


Basic Information

Item Value
gene id si:ch211-81a5.8
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12790796 ~ 12793315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301685.1
CTTATAAACTAAACTCGTCAGCCTGTTTCAATCCTCACGTGTTTACGATTCCTTGCTGTTGCTAATGAGATTACAGAGCATTATGTTGTTTTGGGATTAGTCAGCGGATATTCAGGTGGGGGACAGCAGCGTAAAACGAGTAGCATTTAAGAGTCTCAAAGTGGCACAGCCTTGTGAGGCACAAAACAGCACTTTGAATCAGATATGAATGGTTGCTTTTGATGAGTGCAGACATCAGGTATAAGCTCCTGACTTGAGCCGTAGAGCTGAAACACTATTATTcatttgtgtatattaaatgaGGTGAAGGCCATTTGCATGAGTCAGAAAATCTGCCAGTGTTGAGTCTTGAGGAAGACACAGAACCAAATAATCCCCAGCTGCACGCCTTAACAACGTATTAGAATCGAAAAATGGATGCCATAGTGAGGAAATCCCTGGCCAGCTGTGTATCAGGGGTGAAGGATGGAGATGGTAAGAAAGGGAAGGCTGTTAGGAGGAAAAGTGCACCCTGCTGTTACTCCCACATCGCTTACGACTCGTCCTGGATTCAAGCCTACCAAGCAGAGCTACACAGAGAAAGGAAACTGAGACAAGGCATATTAGCTCAGAAGAAGGCAGAGAGAACAGTTTTGAAGGCCCACTACAGGaacccacaccattacacaaaGACACCCCAGGACAGGAAGCACTTAAAAACCAAAGCCTCTACAAAAAAAGATGACTCACTCTTTGGTGCCTTCCAGGGACTAAGTCTCAATATGGACAGCGTTCGGTCTTTTAAACCTACAGCACCAAGTGCAGAGCAGTGTAAAGTCATGTGATAAAGAATCCCAAAATAATTTTCATCAATAATGTTCACATATCCTGCACCTGTTACAGCAACATAATGTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301685.1 True 896 mRNA 0.44 4 12790796 12793315

Neighbor

gene id symbol gene type direction distance location
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding downstream 6930 12771921 ~ 12783866 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding downstream 20115 12761712 ~ 12770681 (-)
kmt2ba LOC108272954,LOC107701550 coding downstream 66281 12687762 ~ 12724515 (-)
si:ch211-288g17.3 LOC108273223 coding downstream 141477 12636850 ~ 12649319 (-)
styk1a LOC108273367 coding downstream 308654 12465737 ~ 12482142 (-)
clk2a clk2,LOC108437923,LOC107724099,LOC107599513,LOC107656479,LOC107589405 coding upstream 2416 12795731 ~ 12813429 (-)
setdb1a setdb1,LOC108272679,LOC106574954 coding upstream 22756 12816071 ~ 12835472 (-)
lrrc71 lrrc71 coding upstream 44889 12838204 ~ 12855492 (-)
ash1l LOC108272684,LOC108437921,LOC106588182 coding upstream 67258 12860573 ~ 12899960 (-)
scamp3 scamp3,LOC106588184 coding upstream 122663 12915978 ~ 12926264 (-)
G404719 NA non-coding downstream 104328 12686190 ~ 12686468 (-)
LOC113535190 NA non-coding downstream 113150 12663011 ~ 12677646 (-)
G404692 NA non-coding downstream 155583 12601632 ~ 12635213 (-)
G404687 NA non-coding downstream 199263 12589272 ~ 12591533 (-)
G404682 NA non-coding downstream 211990 12576532 ~ 12578806 (-)
G404799 NA non-coding upstream 24269 12817584 ~ 12942105 (-)
G404818 NA non-coding upstream 120626 12913941 ~ 12923945 (-)
G404896 rprd2 non-coding upstream 190398 12983713 ~ 12984373 (-)
G404900 NA non-coding upstream 198886 12992201 ~ 12993258 (-)
G404904 NA non-coding upstream 205928 12999243 ~ 13002077 (-)
trnav-cac_26 NA other downstream 211145 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 211995 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 213136 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 213992 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 215981 12574740 ~ 12574815 (-)
G404999 NA other upstream 347379 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 596601 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 748688 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 762841 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 966446 13759761 ~ 13761557 (-)

Expression


Co-expression Network