tmem220 (tmem220)


Basic Information

Item Value
gene id tmem220
gene name tmem220
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2008006 ~ 2011992 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301693.1
AAAACTCCCAGGTTCATGAACTTcgctctgtgtgtttatgagctGTGGAGAATTTGTTCCTTTGAGTTTTTTATGTTTGATGAACTTGTGAAATGGCGAATGAGAAGATGGTGCAGTTTAATCTGACTTTATGGAGAATCTGTAACTTTATAATGTCGGGGTTTTTCTCTTTAGCTGCTTATGTGCAGatAAACGACCCGGACGCCGGCCTGTGGATGGTCAGCTACGCTATTCCTGCAGGCCTCTGCTTTTTAATCAGCTATCGGCCACAAATAACAGAGACACTGGCATGGAGGAGAGTCGCTGACCTGCATGTGATGATGGCGACGGCGTTCGGTGCTCTGCTGGGCTGGAGTCTGTATAAACACGGGGTCACACACATCTTCCACCAGGAGGAGGGCAGAGAGTTTAGTGGCCTGATGCTGATGGTGATATGGCTGCTCATGTGTCGACACTCGGGACGCGGTGCTGTTGGAGCTCTGAGACTGTGCACAGCCGTGGCCATCACCGCCTTCCCCATCATCACCTGGATCTATTACTACATCCACAAAGAGCTGAGAGCCGACTGGCCTTCACACTGCACCTCCACGCTGTAACACAACCGCACTGATTCCCACACTGTTCAGCACCAAACCCTgagcacacactgacacactgtttaCTGAGCGGCCAGCTTCCCCCGTCACGCGTCCGCAGTGAAGCTGGGAAGGAAATGATGGTGTATGCTGAAGGAAATGaagattatatattttgttaaacaagcaaataaaacaaaaccccTTTTCTATCTTTACCTGA

Function

symbol description
tmem220 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM220 (transmembrane protein 220).

NR:

description
PREDICTED: transmembrane protein 220

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301693.1 True 798 mRNA 0.49 6 2008006 2011992

Neighbor

gene id symbol gene type direction distance location
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding downstream 729 2003622 ~ 2007277 (-)
jmjd8 jmjd8 coding downstream 25450 1979258 ~ 1982556 (-)
LOC117596454 LOC108273013 coding downstream 37574 1962730 ~ 1970432 (-)
hspbp1 hspbp1,LOC107550267 coding downstream 56910 1934506 ~ 1951096 (-)
LOC113524085 NA coding downstream 75880 1916290 ~ 1932126 (-)
tmem100a tmem100 coding upstream 385424 2397416 ~ 2402161 (-)
cbx2 cbx2 coding upstream 486987 2498979 ~ 2507141 (-)
LOC113523971 LOC108272994 coding upstream 505799 2517791 ~ 2524179 (-)
LOC113523961 LOC108272987,LOC106591917 coding upstream 902042 2914034 ~ 3079229 (-)
si:ch211-108d22.2 LOC108272973 coding upstream 1067242 3079234 ~ 3112252 (-)
G398942 NA non-coding downstream 9325 1998086 ~ 1998681 (-)
G398925 NA non-coding downstream 48444 1956046 ~ 1959562 (-)
G398922 NA non-coding downstream 55822 1951921 ~ 1952184 (-)
LOC117596467 NA non-coding downstream 131586 1875199 ~ 1876420 (-)
G398751 NA non-coding downstream 281478 1726120 ~ 1726528 (-)
G398935 NA non-coding upstream 19176 2031168 ~ 2032632 (-)
G398953 NA non-coding upstream 28309 2040301 ~ 2040923 (-)
trnad-guc_31 NA non-coding upstream 236168 2248160 ~ 2248231 (-)
G399016 LOC102218968 non-coding upstream 250612 2262604 ~ 2347812 (-)
G399054 hlf,LOC102226672,LOC103365050,LOC103481883,LOC107089311 non-coding upstream 331979 2343971 ~ 2345042 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 126948 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 416272 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 491692 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 545936 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 690370 1276278 ~ 1317636 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 342917 2354909 ~ 2377631 (-)
G399028 NA other upstream 360304 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 949721 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1005298 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 1135307 3147299 ~ 3196563 (-)

Expression


Co-expression Network