LOC113534634 (LOC108272825)


Basic Information

Item Value
gene id LOC113534634
gene name LOC108272825
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4134338 ~ 4144544 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301699.1
AGTAACTGGATAAACAGCATGGATCCACTGGATTTTCTAACTCATGAGGAGTTATTCAGTTTTTTACACTACAAGAAGACAGAGATCTCCTGCATGGAGGAACCACACACCTTCCTCACCCAGCTCCGAGACCACAACCTGGTCCCTGAGGATCTCTACCAGAAGGTAATAAAGATGAGAAGTGAGGAGAGAAGGCAGAATGGTGTGTATGAGATTTTGGACTGGCTGGAGAATGAACAAGGACAGAGAGTGAAACAGTTTTGgagttgtgtgtttcaggatcACATCCTGCAGAAATATCCCAATCTCCGCTTGCTCCAAAACAGCCTCCTTGATGATTCCTTTAGGAACTATGAAAAGCTTCCCAGTGCAGAGAAACCAAGCAGGAGTAAGGAAGttgagagaaaggaaaagaagcaAGAGCAAAAGAAGGGTgcaacaaagagaaagaaaagtggtgaagagacagatgaagaggaACCAGGCCCTTCCTCTGCGTCCAGCCAGAAGAAACCAGCCATGAAGCCCACTTTGTCCCTACCGTTAAAGAGTGGAGTGCTTCCTGTTACCTGTGGAGATAAAGAAGGCAGATTGTATCCCGACAAGCTTGCTAAAGGAGGCAAGTGTATTTTGTCCCAGGACCTCTGGTTCACTCCATGTGACTTTGAGAGATTTTCAGGAAGGGGAAATAGCAGGAACTGGAAAGTTACCATCCGCTGccaaaacacaacactgcagaAGCTCATAAAGgaggGTTATTTGCAGTGTCCACACACTTACAGAAGCTATGATCAGAAGAGAAAGACAGTTTCTTTTAGCTGTGTGGAAAGCTCCAGCCCTCAGTCAGTATCCAGTGTAGAGACAGATGAATCCAGTGAAGAACATGAAGAGTGGATAGAAGAAGAGGACagggaagaggaagaagaggaagaagacagCGAGACTGAATTTCAGGCTTTTGCTTTACCGGTCAGCTGTGGTTCTGTCAGTGggtttttatataaaagcagATTTGCAGGGTCACGCAGTAAGAGCATCCGCACAGAGGAGCGCTGGTTCACTCCTGAGGAGTTCGTAAGGCAGGAGTTAACTCTGACAGACGGACACTGGAAGAAAGATATACTGTGTCACGGCAAAACCCTTAACTACCTGGTGAAGAAGAAGATCCTGCGTAGCCATTCACTGGTGTGCCCCTGTCGTCTATGCTGTCCCAACACTAAGGATCAGGATAATGATGATGTGTGCTACATTTGTGACTCTGTGGGAAATCTGGTGTGTTGTGACCACTGTCCACGAGCTTTTCACCATCGCTGCCACTTACCAACTCTACAGGAAGACAACCTTggggATAATTGGATGTGTACTTTCTGTGTGTTAAAGACTAACCAGAGTTTGTGGATTCACATGAGCAGGGAAGGTGCTTTGAGCAGTCCTGTTTCTGGAAACAtcatgCGCTGTCAGtatttgctgttgcatttgtATAAGGCGGATAAACAGCGTGTGTTTACTGATGATCCTACCAAAAGTGTGCCGAGATACAGCAGTGTGATCCCCAAGCCCATGTGGCTAAACAGAGTGAAGACCAAACTGCAGAAAGACAAGTACAGAAAAGTGGGACAGTTTGTGCATGACATCAAACTCATCTTCAAGAACTGCCATACTTTTAACAGGgatAATAAGTATGGCATGATGGGAACCATAATGGAAAAGAAGTTTGAGAAGGAGTTTAACACCGTCTTTAATATCCAGTAGCATTTCTGCATCTTACTGGAACGTTTATCATCAAAAgtcatatattacattttaatatataatatgaaatttTTTCTTGGACAGAATTGTTTTACTCTGACAGCATCTGACTATTTAAGTGAACTTGTTATCTTCTGTAATCCTCCTCcttgtttattagtgttttaaGATACAGGTCTTTATATTATGGAACAATTATTATTTGAACCTCAGATACTTCAATTTTAAAATCCAGAATAaaacttatatttt

Function

GO: NA

KEGG:

id description
K24504 SP140; nuclear body protein Sp140

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301699.1 True 2004 mRNA 0.43 15 4134338 4144544

Neighbor

gene id symbol gene type direction distance location
LOC113534511 NA coding downstream 16422 4106876 ~ 4117916 (-)
LOC113534503 pmm1,LOC107691086,LOC107672914 coding downstream 74847 4043045 ~ 4059491 (-)
LOC113534507 tob2,LOC107735623 coding downstream 134775 3993225 ~ 3999563 (-)
rangap1a rangap1,LOC107745514 coding downstream 196700 3927253 ~ 3937638 (-)
LOC113534792 LOC108272837 coding downstream 308834 3822746 ~ 3825504 (-)
LOC117596393 LOC108272830 coding upstream 21780 4166324 ~ 4168560 (-)
LOC117596407 NA coding upstream 25926 4170470 ~ 4175154 (-)
LOC113534587 NA coding upstream 34567 4179111 ~ 4187724 (-)
myl4 myl4,LOC107694961,LOC107754315,LOC107585102,LOC107740645,LOC107662407 coding upstream 194991 4339535 ~ 4345214 (-)
LOC113543884 NA coding upstream 267155 4411699 ~ 4416837 (-)
G399990 NA non-coding downstream 28011 4100097 ~ 4106327 (-)
G399950 NA non-coding downstream 68058 4009067 ~ 4066280 (-)
G399945 NA non-coding downstream 96407 3924966 ~ 4037931 (-)
G399913 NA non-coding downstream 216223 3916468 ~ 3918115 (-)
G399935 NA non-coding downstream 222991 3910640 ~ 3911347 (-)
G400085 NA non-coding upstream 46197 4190741 ~ 4276482 (-)
G400112 LOC108272813 non-coding upstream 89859 4234403 ~ 4293157 (-)
G400131 NA non-coding upstream 136233 4280777 ~ 4281433 (-)
G400133 NA non-coding upstream 139505 4284049 ~ 4284393 (-)
G400428 NA non-coding upstream 389297 4533841 ~ 4534131 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 1416 4120397 ~ 4132922 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 839065 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 900014 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 937775 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 1170181 2961713 ~ 2964157 (-)
LOC113534684 NA other upstream 6355 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 150672 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 453256 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 816558 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 983691 5128235 ~ 5140380 (-)

Expression


Co-expression Network