sox10 (sox10)


Basic Information

Item Value
gene id sox10
gene name sox10
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 677903 ~ 692387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301706.1
CAACGGGGCTCTTTAAGTTGCTGAGCGCGCGACACAGAGCAGCCATTCATTCCGGACAGCCGCAGGAGCGCGAGccgctcagagagagagagagagagagagagagagagagagagagagagagagtgtgtgtgcgtgagaggaggatagcacacacacacacacacacacgcacgcgcgcgcacgcCGCGATTCCGGTCCAGCGCCGTCACGAAGTCAGTGTGAGTCCGCTGCTGAATGGACTCACCTTTACACAGCACCAGGAGAACCACATCAGGAACCTGGATGGACACATCATCCTAATAAAAGTGCATCAGGCTACAAACTGAGATAAATAGTCACTGTGCAGTAGACTTTTCTCCAGAGgaagaggtcagaggtcagagagagtgagaggttTACTCATCATTGTGGTGAATACATCAGATCACCTGGTGAGTGTAGAAGATGTCGGCTGAAGAACAGAGTCTGTCAGAGGTGGAGCTGAGTCCCGGGGTGTCGGATGATGGCGGCTCCGTGTCTCCGGGGCGGGCGGGTCACGCAGGAGACTCTCAGCTGGTGTCAGGAGGTGGGGCAGAGGAGGAAGGGGCGGGACTGTCTCATGCAGGAGTCTCGGTAAAATCAGACGAAGATGACGACCGCTTCCCCATCGGCATCCGCGAGGCGGTCAGTCAGGTGCTGAATGGCTATGATTGGACGCTAGTGCCCATGCCGGTGCGCGTCAACACGGGCAGCAAGAGCAAACCGCATGTCAAGAGGCCCATGAACGCCTTCATGGTGTGGGCTCAAGCCGCACGCCGCAAACTCGCCGACCAGTACCCTCATCTACACAACGCTGAGCTCAGCAAAACACTCGGCAAACTGTGGAGgctCCTGAATGAGAATGATAAGCGGCCGTTCATCGAGGAGGCGGAGCGTCTGAGGAAGCAGCATAAGAAAGATTATCCGGAGTATAAATACCAGCCCAGGAGACGGAAGAACGGGAAGCCGGGATCCAGTACCGACAGCGACGCCCACTCTGAAGGTGATGTCActcacagccaatcacattaCAAGAGCCTTCACCTGGAGGCGGGGCATGGTGCTGGGGCAGGGTCTCCTCTCACTGatggacatcacacacacccagcagGCTCCAACCACAGCCCCCCGACTCCTCCCACTACTCCCAAAACAGAGCACCAGGGTGGCAAATCaggagaggggaagagagagggTGGGGCCAGAGGGCTGGGAGTGGGGGCAGATGGAAGCTCTGCCTCTTCAtcgtcttcctcttcctcaaAACCACACCTGGATTTCGTGAACGTGGACATCGGCGAGATCAGCCATGAAGTGATGGCCAACATGGAGCCATTTGATGTCAACGAGTTTGACCAGTACCTGCCTCCTAATGGGCACCACCCATCAGGCTCAGGCTCCGCCTCCTGCCCAGCCCCATCCCCTTCTCCTTACTCCTACTGGCTGTCGAAACAGCAGCTAAGCTCAGAAGGTGGGAAAACACAGATCAAGAGCGAGACGCATTTCTCGGGTAATGCTGATGCttcagtgggcggggcttccacaTCAGGGGGTGGAGCATCAGCTCATGTCACATACACACCTCTCAGCCTGCCTcattatggctctgctttccccTCTTTGGCCTCCAGGGCAGCACCGTTTGCCGAATACGGAGATCACCAAGCATCTGGatcatattacacacactcgGGCCAATCAGGGCTTTACTCCGCCTTCTCCTACATGAGCTCCGCCCAGAGGCCCATTTACACTGCTATCACTGACCCTGCCCCTGGGAATAGCCCCACCCACTGGGAACAGCCTGTGTATACCACTCTGACCCGgccgtaacacacacacaagagaaagacatgatgatgatgatgatgatgacgatgatgatgacgacgatgatgatgatgacgatgatgatgatgacaataacaataatgatttAGTCTCAGACACACAGATCACACATTTAATGGGGAAAAAGATTTGACAGCCCACTAGCAACACACATATATTTGTCTAACTGTCATTGTGGCTGATCCCATACAGGTGGGCGTGGCCTCctgatgtgcacacacacacacacacacacacacacacacacacacacaattagacAGGACATTTTTCGTTGCTCATGTGAAATGGAATTTGAGTGTCAGTGTTTCTGAAGGACATTTTTACCTGCACATTTAAACAtcaaactttattattattattattattattattattattattattattattattatggaataATAATTCTTTCTTATTAACCAAAACGAGGccattttctttgttgttgttgttagaaTCTTTGACTGTTGATGGTTTTTGTCATCATGACCACCACTGAACTGCATTTTGGTGATGAAAtgagtttgtgtatatattttagtGTTAGCGTGGTGGATCGATGTGTCGATATGATAACAACACTGTAACACTTTTCATTTCCTAGACGACTTTGCGTTGTTTTATCGTAACCAGCGAGAGAGGATGTGAACGCCAACCACAAGTGCCTACAGCACACTGAAACTCAtttagaaaatgtttgtgtgattttttctttcaaatttataatgttaaaatgaaattttctttcagaaatgacagagaaaCAGCTAGAGAATTCATGAGGGGTGGAGCTTGTACATGGTGGGCGGAGCAACCACTCACATAATGTGCCTTCTTCTACTCTGACTACGaacatttaatgatttattacatGGACATACTGTTAATATTTTCactctcttcttttttatttcttttctaattttaacTTTAGTGTTCTTTCATCTATATTCagtagtattatatatatattaaaaatatacaaaaactaTACAAAGTGTTAGAGAATCTACATGCAGTAGGTGgagcttgttttatttatattgttgtttttattctctgttttccttttaAGTGACTTTTTTGTGTTACACGTTGTTTTGTGTACGAGTTTTTTGTTAATGTGTTCCAGTAGAGACTAACGACACACATACTAAATAAAACTCCGTCCGCTTttctat
>XM_034301707.1
gaagGAAAATGGCGGCTTTGTGCTGAAATGTGTGCACTGAGGGGAAAAAGACCTGAGTGGAAGTTTATGAAGGCACAAGAGCAGCTCTGTTCGGGAGAGGGAGGGCGGGAGCGCGCGCTACACcccgGTCAGTGTGAGTCCGCTGCTGAATGGACTCACCTTTACACAGCACCAGGAGAACCACATCAGGAACCTGGATGGACACATCATCCTAATAAAAGTGCATCAGGCTACAAACTGAGATAAATAGTCACTGTGCAGTAGACTTTTCTCCAGAGgaagaggtcagaggtcagagagagtgagaggttTACTCATCATTGTGGTGAATACATCAGATCACCTGGTGAGTGTAGAAGATGTCGGCTGAAGAACAGAGTCTGTCAGAGGTGGAGCTGAGTCCCGGGGTGTCGGATGATGGCGGCTCCGTGTCTCCGGGGCGGGCGGGTCACGCAGGAGACTCTCAGCTGGTGTCAGGAGGTGGGGCAGAGGAGGAAGGGGCGGGACTGTCTCATGCAGGAGTCTCGGTAAAATCAGACGAAGATGACGACCGCTTCCCCATCGGCATCCGCGAGGCGGTCAGTCAGGTGCTGAATGGCTATGATTGGACGCTAGTGCCCATGCCGGTGCGCGTCAACACGGGCAGCAAGAGCAAACCGCATGTCAAGAGGCCCATGAACGCCTTCATGGTGTGGGCTCAAGCCGCACGCCGCAAACTCGCCGACCAGTACCCTCATCTACACAACGCTGAGCTCAGCAAAACACTCGGCAAACTGTGGAGgctCCTGAATGAGAATGATAAGCGGCCGTTCATCGAGGAGGCGGAGCGTCTGAGGAAGCAGCATAAGAAAGATTATCCGGAGTATAAATACCAGCCCAGGAGACGGAAGAACGGGAAGCCGGGATCCAGTACCGACAGCGACGCCCACTCTGAAGGTGATGTCActcacagccaatcacattaCAAGAGCCTTCACCTGGAGGCGGGGCATGGTGCTGGGGCAGGGTCTCCTCTCACTGatggacatcacacacacccagcagGCTCCAACCACAGCCCCCCGACTCCTCCCACTACTCCCAAAACAGAGCACCAGGGTGGCAAATCaggagaggggaagagagagggTGGGGCCAGAGGGCTGGGAGTGGGGGCAGATGGAAGCTCTGCCTCTTCAtcgtcttcctcttcctcaaAACCACACCTGGATTTCGTGAACGTGGACATCGGCGAGATCAGCCATGAAGTGATGGCCAACATGGAGCCATTTGATGTCAACGAGTTTGACCAGTACCTGCCTCCTAATGGGCACCACCCATCAGGCTCAGGCTCCGCCTCCTGCCCAGCCCCATCCCCTTCTCCTTACTCCTACTGGCTGTCGAAACAGCAGCTAAGCTCAGAAGGTGGGAAAACACAGATCAAGAGCGAGACGCATTTCTCGGGTAATGCTGATGCttcagtgggcggggcttccacaTCAGGGGGTGGAGCATCAGCTCATGTCACATACACACCTCTCAGCCTGCCTcattatggctctgctttccccTCTTTGGCCTCCAGGGCAGCACCGTTTGCCGAATACGGAGATCACCAAGCATCTGGatcatattacacacactcgGGCCAATCAGGGCTTTACTCCGCCTTCTCCTACATGAGCTCCGCCCAGAGGCCCATTTACACTGCTATCACTGACCCTGCCCCTGGGAATAGCCCCACCCACTGGGAACAGCCTGTGTATACCACTCTGACCCGgccgtaacacacacacaagagaaagacatgatgatgatgatgatgatgacgatgatgatgacgacgatgatgatgatgacgatgatgatgatgacaataacaataatgatttAGTCTCAGACACACAGATCACACATTTAATGGGGAAAAAGATTTGACAGCCCACTAGCAACACACATATATTTGTCTAACTGTCATTGTGGCTGATCCCATACAGGTGGGCGTGGCCTCctgatgtgcacacacacacacacacacacacacacacacacacacacaattagacAGGACATTTTTCGTTGCTCATGTGAAATGGAATTTGAGTGTCAGTGTTTCTGAAGGACATTTTTACCTGCACATTTAAACAtcaaactttattattattattattattattattattattattattattattattatggaataATAATTCTTTCTTATTAACCAAAACGAGGccattttctttgttgttgttgttagaaTCTTTGACTGTTGATGGTTTTTGTCATCATGACCACCACTGAACTGCATTTTGGTGATGAAAtgagtttgtgtatatattttagtGTTAGCGTGGTGGATCGATGTGTCGATATGATAACAACACTGTAACACTTTTCATTTCCTAGACGACTTTGCGTTGTTTTATCGTAACCAGCGAGAGAGGATGTGAACGCCAACCACAAGTGCCTACAGCACACTGAAACTCAtttagaaaatgtttgtgtgattttttctttcaaatttataatgttaaaatgaaattttctttcagaaatgacagagaaaCAGCTAGAGAATTCATGAGGGGTGGAGCTTGTACATGGTGGGCGGAGCAACCACTCACATAATGTGCCTTCTTCTACTCTGACTACGaacatttaatgatttattacatGGACATACTGTTAATATTTTCactctcttcttttttatttcttttctaattttaacTTTAGTGTTCTTTCATCTATATTCagtagtattatatatatattaaaaatatacaaaaactaTACAAAGTGTTAGAGAATCTACATGCAGTAGGTGgagcttgttttatttatattgttgtttttattctctgttttccttttaAGTGACTTTTTTGTGTTACACGTTGTTTTGTGTACGAGTTTTTTGTTAATGTGTTCCAGTAGAGACTAACGACACACATACTAAATAAAACTCCGTCCGCTTttctat

Function

symbol description
sox10 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in olfactory bulb development. Acts upstream of or within with a positive effect on iridophore differentiation; melanocyte differentiation; and xanthophore differentiation. Acts upstream of or within several processes, including nervous system development; neural crest cell migration; and sensory organ development. Predicted to be active in nucleus. Is expressed in several structures, including glioblast; head; iridoblast; nervous system; and neural crest. Used to study Hirschsprung's disease and Waardenburg's syndrome. Human ortholog(s) of this gene implicated in Kallmann syndrome; PCWH syndrome; Waardenburg syndrome type 2E; and Waardenburg syndrome type 4C. Orthologous to human SOX10 (SRY-box transcription factor 10).

NR:

description
PREDICTED: transcription factor SOX-10

GO:

id name namespace
GO:0048752 semicircular canal morphogenesis biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0048484 enteric nervous system development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0014044 Schwann cell development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0048709 oligodendrocyte differentiation biological_process

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301706.1 True 3056 mRNA 0.48 4 677903 692387
XM_034301707.1 False 2968 mRNA 0.47 4 677903 690295

Neighbor

gene id symbol gene type direction distance location
LOC117595703 LOC108272505,LOC108272504 coding downstream 16840 652498 ~ 661063 (-)
LOC113547081 NA coding downstream 31952 644048 ~ 645951 (-)
LOC113525082 LOC108272487,LOC108272486 coding downstream 89251 571701 ~ 588652 (-)
LOC113525090 NA coding downstream 116866 528261 ~ 561037 (-)
LOC113525088 LOC108272487,LOC108272485,LOC108272486 coding downstream 218720 418017 ~ 459183 (-)
LOC113541895 kcnj4 coding upstream 34563 726950 ~ 734134 (-)
LOC113527787 NA coding upstream 55523 747910 ~ 751320 (-)
LOC113527126 NA coding upstream 63614 756001 ~ 765127 (-)
LOC113527139 NA coding upstream 141505 833892 ~ 839441 (-)
LOC117596399 NA coding upstream 416306 1108693 ~ 1111909 (-)
G398338 NA non-coding downstream 33894 642402 ~ 644009 (-)
G398304 NA non-coding downstream 81914 595118 ~ 595989 (-)
LOC117596419 NA non-coding downstream 260584 414465 ~ 417319 (-)
trnar-ccu_18 NA non-coding downstream 367248 310583 ~ 310655 (-)
G398158 NA non-coding downstream 370494 307118 ~ 307409 (-)
G398393 NA non-coding upstream 149549 841936 ~ 846790 (-)
G398394 NA non-coding upstream 155358 847745 ~ 848753 (-)
G398395 NA non-coding upstream 158063 850450 ~ 851339 (-)
G398371 NA non-coding upstream 186638 879025 ~ 881892 (-)
G398403 NA non-coding upstream 190802 883189 ~ 941747 (-)
LOC117596396 NA other downstream 195895 473750 ~ 482008 (-)
pick1 pick1 other downstream 352358 312408 ~ 325545 (-)
LOC117596444 smdt1 other upstream 47856 740243 ~ 890302 (-)
fam234b fam234b other upstream 199533 891920 ~ 906375 (-)
LOC117596481 NA other upstream 215238 907625 ~ 907779 (-)
LOC117596482 NA other upstream 217682 910069 ~ 910223 (-)
LOC113536357 NA other upstream 221811 914198 ~ 914352 (-)

Expression


Co-expression Network