LOC117595703 (LOC108272505,LOC108272504)


Basic Information

Item Value
gene id LOC117595703
gene name LOC108272505,LOC108272504
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 652498 ~ 661063 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301708.1
ATGCGCTTTCTACATCTACATAGATCACGGTGGCGCGTAGTCGTTTCCGGGAAGgagaagatttaaaaattaaCAGGGATTTTAACGCGGAAAATGTCGACTCCAGGAGAAGGGTGAAGAGAAGAAACCATCAGGAAGAGCCAGTCCTGATTTAGACCGTCCAAactTGGGAAAGGGTGCAGAGAAGAAACCATCAGGAAGAACCAGTCCTGATTTAGACCGTCCAAACATGTCCACGTTGAGGATGGTGCTGGTGGGAAAAACTGGAGCTGGGAAAAGTTCCTCAGGAAACACCATTCTGGGCAGGAAAGCCTTCAGAGCTGCCAAAAGTGGATCATCTATAACTAAAGAGTGCTGGAAGGTGACTGGAGAAGTGGCTGACACCCTGGTCGTGGTGGATAATCCAGGTCTTTTTGATGACACACTTTCTGAGAAAGACTTGAAAAAAGAGATGTGTAAGTGCATTAACATGATGGCTCCAGGACCCCATGCCATCATCCTGGTGATTCAGCTTGGCCCCTTCATGGAGGAGGAACTTCTCGCAGTGGAGAAGATCAGAGCTCTTTTTGGAGAAGAAGCAGATAAATACACCATGGTCCTCTTCACACATGCAGACCAACTCACAGGAACCATTGAGGAACATCTGCTTGAGGCTGGAGGGAAACTCAAAGCCCTGATAGATGTATTTGGAGGGAGGTATCACGTGTTTGACAACACAAGAATGGATGATCGGGCTCAGGTTCTGGAGTTTCTGGACAAAGTGGAAAGCATGATGTCTGCAAACGGGGGTGAACACTACACCAGCGCCATGTTTCAGAATGTGGAGGAGAAgctgaaggagaaggaggaggagttaaAGAAACACTATACAGAATTAGAGAGAAAATTAACATCTCAGTACAACGAGGAAATCAGAAAATTACAGGAGACAATTGAAAAGCTAAAGgaatcagagggaaaaaaagagaaaaggattGAACAGTTGAAAGAGTTAATTAAAAAGAAGGATAGGCAACTGAGAGAATACAGGAGATTCTTTAATGCAAGGCGCAGGAATGTGAGACTGGAGGCAGAACAAACAGACGTTGATGAAAACATACCTGTGGCCGTGTGTGCCAGGTTAAGAAGCCTTCGTCTTTAAAAGCAGAATATTTTTGTGGACTGAACGCATGCCGTAaccgtgtgtgagtgtgctgttCAGCCTAACAGCCTTCTGCTCATTTCACGTCAGTGTGGATATTCAGAGGTGAGTTAAGCATGCGGAGAGAAGAATTTTTTCATACCAAAATATGACTTCACGCTATATGACTTTAGCATGATTGTTACTGGTATTTTAACCTCAGGCCTTCTGAGACATTGTTTTGCCACTCTATCTGCCATTTCATTCCCATCAGCACCACGTGCACTGAAACCccaaaataaatcacattcaCATTATGTTCCAGCACAAGATCTTGTCTACACCTTTATTCTCCTGACTGGAGTCTCTGATGGACAGATAAGGAATTTGAGCTGATCACTGGCTGTACTGGGCAAACCTCCTCAGCCCCTGCAGCGCAGTGAGTGTGAGTTTATTTGGGAGCAGTGACTGGACTGCCAAACCATCTGATAATCTTTTTCAGAAGATGAAACTCAGGCTCATATGCTGCAGCTGCTGTGAGCCATGTGTATCAATTTCCAAGAAACCACAATACCACTGTTGTTATTACcatcttttttttgctctgctTTCTAAAGGAGGTGCAGTCAAACTACTCTTTTATTAATATAGCTAAATCAGCTACTTTGTCGAACTGAGGAAAATCAACTGTGTCATTTTCAATGTATTGTGCACAAAATACTGGGAAAAAGAAACTTCtccctccttcaattctgtgtgtttatttatcagggcctgaATAACACTTGTGTGTTCCACActaacttctataaacaaactaataatctcaccaaaaatacacaacagatttcaacatgcagttattttttccccaaaaaataaaccaacattcagaaaccaggtgggaaaataAAGGCACCCTATAACTCAGTAACATgcagaaccacctttagcagcaGTAACCTGAAGTAAatgtttctgtaggagtttatgaGTCTCTCACATGTTCTGGAGAAATCTaacccactcttctttgcagcaTCGCTTCAGTTCAGTGGTGTTTGAAGGCATTCGTTAATGCACAGCTCTCTGAAGATCCCTCCAcggcatctcaatggggttgaggtctggactttcaCTTGGCCGTTCCAAcaccatgatttttttcttcttcagccattcagatgttggtttgctggtgtgcttgggatcattgtcctccTGTTCACCACACAACTGTtgtttaggccctgataaataaaaacagaattgaaggagggggtattttctttttcccatgactgtacatGTACTTACTACAGAGTATGCcgtattttgtttttctatttgtaaATCACTCTTAGTAATAAACAGTTAACATTAATGAACTGTAAAACAACGATAATCAAATACAGTGatctacattatatggccaaatgtatgtggaaacctgaccatctcACCTATATGAGCTtggtgaacatcccattccaaaagcttgggcattaatatggagttgccCCGCTTTCTGGCAGAAAAAGGTCCAGATCATTATCCCTCCTCCACGACACTTTACTGCTGGCACTCTGCTTTCTGGCCTTCTGGCATCCATCAATCCCAGATTCATGGTCTCCCACTTCATGGCTAAGCAGTTGTTGCTCCTAGACGCTTCCatttcacacaaaataaaacttaCCGTGAACTGACTTGTGGCAAAGTCAGTGGCATCCCATGACAGTGTCACATTCAGTATGACCCATGCTACTGCCAGTGTTAatctgtggagatggcatggctATGTGCTTGATCTTATGGACCTGTTAGCAATGGGTATAGCTGAAACACATGAACTCAGTCATTAGGAGGGGGTgaacatacttttggctgtataatGTATGAGTATCATGGCTAATAGGagtgtgatgatggtggtgcCTCAGTACAATACATTTTCAGTAGAGCAGAAATAAGCAGTGCCTGTATATGtgccttaggtttccatttCCAGTGGATTCAAACATTTATACTATAAAATAAAGCGACTGAAACTTAATGATGAGTGTTTGTGACATTTAgcagtgtataaaaatgtaaacaaaattacaattttgcataacaaaattaaaacatttaaaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301708.1 True 3260 mRNA 0.42 5 652498 661063

Neighbor

gene id symbol gene type direction distance location
LOC113547081 NA coding downstream 6547 644048 ~ 645951 (-)
LOC113525082 LOC108272487,LOC108272486 coding downstream 63846 571701 ~ 588652 (-)
LOC113525090 NA coding downstream 91461 528261 ~ 561037 (-)
LOC113525088 LOC108272487,LOC108272485,LOC108272486 coding downstream 193315 418017 ~ 459183 (-)
LOC113525089 LOC108272484 coding downstream 253312 373143 ~ 399186 (-)
sox10 sox10 coding upstream 16840 677903 ~ 692387 (-)
LOC113541895 kcnj4 coding upstream 65887 726950 ~ 734134 (-)
LOC113527787 NA coding upstream 86847 747910 ~ 751320 (-)
LOC113527126 NA coding upstream 94938 756001 ~ 765127 (-)
LOC113527139 NA coding upstream 172829 833892 ~ 839441 (-)
G398338 NA non-coding downstream 8489 642402 ~ 644009 (-)
G398304 NA non-coding downstream 56509 595118 ~ 595989 (-)
LOC117596419 NA non-coding downstream 235179 414465 ~ 417319 (-)
trnar-ccu_18 NA non-coding downstream 341843 310583 ~ 310655 (-)
G398158 NA non-coding downstream 345089 307118 ~ 307409 (-)
G398393 NA non-coding upstream 180873 841936 ~ 846790 (-)
G398394 NA non-coding upstream 186682 847745 ~ 848753 (-)
G398395 NA non-coding upstream 189387 850450 ~ 851339 (-)
G398371 NA non-coding upstream 217962 879025 ~ 881892 (-)
G398403 NA non-coding upstream 222126 883189 ~ 941747 (-)
LOC117596396 NA other downstream 170490 473750 ~ 482008 (-)
pick1 pick1 other downstream 326953 312408 ~ 325545 (-)
LOC117596444 smdt1 other upstream 79180 740243 ~ 890302 (-)
fam234b fam234b other upstream 230857 891920 ~ 906375 (-)
LOC117596481 NA other upstream 246562 907625 ~ 907779 (-)
LOC117596482 NA other upstream 249006 910069 ~ 910223 (-)
LOC113536357 NA other upstream 253135 914198 ~ 914352 (-)

Expression


Co-expression Network