LOC117596451 (LOC108261350,LOC108261581)


Basic Information

Item Value
gene id LOC117596451
gene name LOC108261350,LOC108261581
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5120270 ~ 5127437 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301715.1
GCGCCATCACTGAAAAAGGCGGAAGTTGGCGTCTAACTTTAATTTGTTTTCAAACAAAATGCTCCTGAAGTTCTCTCCTGGAATTATGAATTGTGGAATTATAAGTAATTGCCTAAACACAGGGAAAGCAAAGATTATTTATACTTTAGCCATTTTCTTACATCTCCAGCAGTCGTGTTGTGatgtTGATTCCATCACTTGGAATTTCCTCGGCTCTGAAGGCCTCAGCCTTCCCAAGTACACAGAGAGAATCCTTGTGAATGATGTGACCCTCTTTTACTATGACAGCAGCATGAAGTCGACAGCACCATGTCCAGAATGGCTCGACACCACAGCTGGTCTGCAACACTGCAAAGAGACCAGATCTTTATCCGACCACAACAGGGAAAATATGGCTTTAGCACTCCAAAATGCCATATCGCAATTCAACCTCACAGCTCCAGAGGTCAGGCTTTTTGAGCGGCAGAGATCTGGTTCCACTCTCCTCACCTGTCATGTGACTGGGTTTTACCCCAGAGCGGTGCAGGTGAAGTGGATTGGAGCAGATTTACAGCTGGTGGATGATGAGATGAATGATGTGCTGCCTAATGGTGATGGCACGTATCAGACCAGAAGGAGTGTGATCAGACCTGAGGAGAAAACAGGAGATCAGCACTACAGCTGTGTAGTGCATCATAGCAGCGTAGAGGGAAATATTACAATCACCTGGGGTAAAGAAGAGAAACCCATGCTTCCTGTTTGGATTACACTAGGCTGCATTTTCTTGTTCACTGTAGTTGGGCTTGTAGCTTGTctaagaagaaggaggagaaattAAACCCTAATGATCAACTAATACCTACGTTCAATTCAAGGTTCTCCAGGCTGCTATGAAAGAAAATGGCCACTCATGAGAAGATCGAGCTGTCTATCCTCAGCCTCGATCTCCTATCTCCTATAGCCCCTGTCCTCAGGTCTAGCTGTTTACTCTTGGATATTTGCACACAACTCCTCTTCACTAAGGTCActctaaaagaaaaatgagaattcttgttttttgtttgtttgttttaccaGAAATGTCATACTTTTCTTACAATACCTAAATACCTTTtactgaggtaaaaaaaaaaaaaaaaaatagtttgaaagCTTATTGTGAATCAGACTGAGCCACAGTTTTGTCCTTAAACTCACATGAACAACCATCAACTGTCTTTactctcataactacatacatgtcctattagtttcactggaGCTActtaataatatgttttaacaTAAACAACCagataataaatagaataataaattattagaaGCTCTTTGAGGAAGAAGGTTTACGACTGATAATTTTACCatactgtattactgtgctTGCTatgtcatgtctttttttttttttttttttttttttgtgtgctttACTTGTCTATGAAGCATACCTCACTCCCAGACCTTCTTTTTCCAGATAAATATTGTCActtattaatgtttttacttCAGCCATTAGGAGGCAGTAAAGCCTAAATTAATATAGTTTATTGggtttcattatgtttttgtgtagatttatCTGGCTTATTGACACAATACAATCAAGATTCACTTTATTGTATGCAATATTTACTTTAACATTTTTGATGTTTTACtgactgtttatttgttttatagctTGTTTATTGTTCTATCAAATGCATTTCAAAAAAAACCATTTAACTAGTTTATTGACTGTTTGCtgctttgattttatttattctttttttaagttagCACAATTTAATTATGATCAAATCTCTTATAACTGTCACGTTGTGAACAGTGTGCTGTCTGTGCTTTGTGATTGGTGGTGGGTGTCGGGTTGAGAGATTTCACATCACAGCCTTGTGAGATGACTCAGAGTAAATCATCAGATAACAATACAGCctacagagatagagagatagagagagagagagagagagagagagagagaggagctgtTGGTTTAAAATTCACCCTGATCAACACTAGCACTGTCAGCCTGCACAAGCTCATGATGGACGTCTGTGTTTGCAGGAACACCACGTGTGTCTgttgtaaaaaattatttgccaGCTGACTTAGATGAAGAAGAGAGTAACGTTCTCATCGCTCCACTTCCCTGGAGCTCTGACTCCATGtgcttgtggtttttttttttcatgttcattgtTTATTGCTTTCTTCACCTGTTATTCTTATCACCTGTGTCTAGTTATTGATTGTGTATATATTTCCGTATTGTGTTTAGTTTTGTCataggtttttgtttgtttctttgtctaGCACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301715.1 True 2294 mRNA 0.38 5 5120270 5127437

Neighbor

gene id symbol gene type direction distance location
si:ch211-195b13.1 si:ch211-195b13.1,LOC108273319,LOC103036792,LOC108411161,LOC105892152,LOC104955017 coding downstream 60687 5053765 ~ 5059583 (-)
eya3 eya3 coding downstream 68228 5040286 ~ 5052042 (-)
eepd1 eepd1 coding downstream 166024 4928478 ~ 4954246 (-)
snapin snapin,LOC106569889 coding downstream 209293 4908526 ~ 4910977 (-)
si:dkey-222b8.1 si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332 coding downstream 214875 4884598 ~ 4905395 (-)
LOC117596409 NA coding upstream 23651 5151088 ~ 5152608 (-)
si:dkeyp-92c9.2 LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595 coding upstream 81716 5209153 ~ 5213318 (-)
LOC113543887 LOC108262220 coding upstream 87563 5215000 ~ 5221257 (-)
LOC113543693 LOC108273363,LOC108262220 coding upstream 101830 5229267 ~ 5232051 (-)
LOC113543750 NA coding upstream 123679 5251116 ~ 5257472 (-)
G400501 LOC108272940 non-coding downstream 84348 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 107475 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 201387 4911350 ~ 4918883 (-)
G400503 NA non-coding downstream 236267 4881706 ~ 4884003 (-)
G400494 NA non-coding downstream 286287 4833754 ~ 4833983 (-)
LOC113543905 NA non-coding upstream 112662 5240099 ~ 5242052 (-)
G400622 NA non-coding upstream 151466 5278903 ~ 5279314 (-)
G400676 NA non-coding upstream 243635 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 456118 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 683907 5811344 ~ 5812012 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 111806 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 485213 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 781843 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 960520 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 987348 4120397 ~ 4132922 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 798 5128235 ~ 5140380 (-)
G400815 NA other upstream 459961 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1045551 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1244180 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 2126996 7254433 ~ 7276782 (-)

Expression


Co-expression Network