LOC117596454 (LOC108273013)


Basic Information

Item Value
gene id LOC117596454
gene name LOC108273013
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1962730 ~ 1970432 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301726.1
TCCTGTCATCTCTTGTCATCATCCTTGTATCAGtacgtaagtgtgtgtgtgtgtgtgtgtgtctgtatgaaGGTGCGAGCTCGGATCTTGAAACTTTACACAGGGATTCAGAAACATGACAGAGTCTgaagACAAGTTAGGTGAATACAACATGACCATGGCTCTGCAAAACAACTCATACACAGCAgtttcccGTCCAGATTGGCTGTTGTACGTGGTTCCTTCTATTGCCTTTGTACTTGGAGTGTTCCTATTCTCAGTGGTCTTCAGAACACAGCGtcacagagagaCAGAAGCATTTCGGCGAGTCGCTGCACTAAAGACCATCATGAACGCAACCTCACCAGGACACACATACGCAAGGTACACAAGtcaAGGACCCATGGGAGCAGAGAATAAGGATTTCAGCAAACTGCAGAACTCCAGCGAAACTCAAGGAAACCTTACAAAACAAGAGGCCCAGTCTTATGAGAACGTTACAACGGTAATCTACAGTAATGAGGATAAAGTCAACTACTGCGTCCGTCAGGATGAAGATTATGTCACTCCTGATGCAGCAGATGAAGTGACAGAACCCGAAAAGACCACCTACCTTCATTCACATCACAACCTTACAGACAccgATGGAGAGTCATATGAAAACATGGACGGGTGTGTGTATGCTCATCCTCGCCAACCCACACTAAAGAATGCACTCAGCACTGAGGACGATGatTATATTAATCCTGAtgaagaggaaaaacacaacctggaacagacagatacagagTCCTATGAGAACATGAATGGCTCAGTATGTCCCAACACAGACGcacaaaccaacacacacactgtggatgAAGgcTGGTATGAGTGCATGGACAGAAGACAAAGAAGCGAGAAGCACACATAATACAGGATATTAGTGAGGGGTGAAAGGAaaccaacccacacacacacacacacacacacacacacacacacatacaatttaTTCATATCCAATAAGCAAGTAGTAATACAGGACATACATAATAGAGATcaatacagaatacagaaaaatacatcatcttACAGTTAAAACATGGACAGTATCAAGATTATCATGAATATAAATAGCAGCTCTTCACTATATATATGACGGCTGCCAGTGATAGCAGACACTGAACAGTATTTTGCTAGCTGTTTAGCTCTCCTTTTAGGCAGCGCTAGCAGCTGTAAGCCCCTGATGACTAGTCTGTGGACGTGTCCTAGGCTGCTGTATATGAAGACcaaaagtctacacttgtagCTGAGCTCTGAGATGTTCCTCAGGAGCAGTTGGTACTTGATAACCTTAGTCATGAAGGTTTCCTCGAGGCCTGTAAGATAAAATATCTGTCTGAACTCTtcatttacaacaacaacatctgGGTTATTAGCAGAGAGATTtgcaaaaatgaatgaatcattgttACGGAAGATGTACAATGTACAAGAAGGCTTGTCCAGTTTCACAGAAGAAGCTAAATGGATTGATATTTCTTTCGTTATGAAGTCTACTATTCTATTCTAAACCATCTATACAGGAATATTTCGACgtctgtacgcatataaacctCGTATTCGGAATacggctgcaacccgaataagGACCTTAAacggaatactgatgtgcatgtaaacgtagccattgAGTATAATGTTAGTGTGTAAGTGTCAAGTGTGTGAAGAGAAATACTGCCCTTTACTGGCGTGATGgaagatgaataaaatattcagcaTTTGTTCAGGCTAGCGTCAGTTAAGAATCCATTCAGGAattagctgtgttttattttaggaCCATGACACAGGAACTTCATTATAAACCATGCtgtaattttgtaaaatatcaTAATTCTGTTGTACGacttgtaatta
>XM_034301727.1
TCCTGTCATCTCTTGTCATCATCCTTGTATCAGtacgtaagtgtgtgtgtgtgtgtgtgtgtctgtatgaaGGTGCGAGCTCGGATCTTGAAACTTTACACAGGGATTCAGAAACATGACAGAGTCTgaagACAAGTTAGGTGAATACAACATGACCATGGCTCTGCAAAACAACTCATACACAGCAgtttcccGTCCAGATTGGCTGTTGTACGTGGTTCCTTCTATTGCCTTTGTACTTGGAGTGTTCCTATTCTCAGTGGTCTTCAGAACACAGCGtcacagagagaAAGCATTTCGGCGAGTCGCTGCACTAAAGACCATCATGAACGCAACCTCACCAGGACACACATACGCAAGGTACACAAGtcaAGGACCCATGGGAGCAGAGAATAAGGATTTCAGCAAACTGCAGAACTCCAGCGAAACTCAAGGAAACCTTACAAAACAAGAGGCCCAGTCTTATGAGAACGTTACAACGGTAATCTACAGTAATGAGGATAAAGTCAACTACTGCGTCCGTCAGGATGAAGATTATGTCACTCCTGATGCAGCAGATGAAGTGACAGAACCCGAAAAGACCACCTACCTTCATTCACATCACAACCTTACAGACAccgATGGAGAGTCATATGAAAACATGGACGGGTGTGTGTATGCTCATCCTCGCCAACCCACACTAAAGAATGCACTCAGCACTGAGGACGATGatTATATTAATCCTGAtgaagaggaaaaacacaacctggaacagacagatacagagTCCTATGAGAACATGAATGGCTCAGTATGTCCCAACACAGACGcacaaaccaacacacacactgtggatgAAGgcTGGTATGAGTGCATGGACAGAAGACAAAGAAGCGAGAAGCACACATAATACAGGATATTAGTGAGGGGTGAAAGGAaaccaacccacacacacacacacacacacacacacacacacacatacaatttaTTCATATCCAATAAGCAAGTAGTAATACAGGACATACATAATAGAGATcaatacagaatacagaaaaatacatcatcttACAGTTAAAACATGGACAGTATCAAGATTATCATGAATATAAATAGCAGCTCTTCACTATATATATGACGGCTGCCAGTGATAGCAGACACTGAACAGTATTTTGCTAGCTGTTTAGCTCTCCTTTTAGGCAGCGCTAGCAGCTGTAAGCCCCTGATGACTAGTCTGTGGACGTGTCCTAGGCTGCTGTATATGAAGACcaaaagtctacacttgtagCTGAGCTCTGAGATGTTCCTCAGGAGCAGTTGGTACTTGATAACCTTAGTCATGAAGGTTTCCTCGAGGCCTGTAAGATAAAATATCTGTCTGAACTCTtcatttacaacaacaacatctgGGTTATTAGCAGAGAGATTtgcaaaaatgaatgaatcattgttACGGAAGATGTACAATGTACAAGAAGGCTTGTCCAGTTTCACAGAAGAAGCTAAATGGATTGATATTTCTTTCGTTATGAAGTCTACTATTCTATTCTAAACCATCTATACAGGAATATTTCGACgtctgtacgcatataaacctCGTATTCGGAATacggctgcaacccgaataagGACCTTAAacggaatactgatgtgcatgtaaacgtagccattgAGTATAATGTTAGTGTGTAAGTGTCAAGTGTGTGAAGAGAAATACTGCCCTTTACTGGCGTGATGgaagatgaataaaatattcagcaTTTGTTCAGGCTAGCGTCAGTTAAGAATCCATTCAGGAattagctgtgttttattttaggaCCATGACACAGGAACTTCATTATAAACCATGCtgtaattttgtaaaatatcaTAATTCTGTTGTACGacttgtaatta
>XM_034301728.1
TCCTGTCATCTCTTGTCATCATCCTTGTATCAGtacgtaagtgtgtgtgtgtgtgtgtgtgtctgtatgaaGGTGCGAGCTCGGATCTTGAAACTTTACACAGGGATTCAGAAACATGACAGAGTCTgaagACAAGTTAGGTGAATACAACATGACCATGGCTCTGCAAAACAACTCATACACAGCAgtttcccGTCCAGATTGGCTGTTGTACGTGGTTCCTTCTATTGCCTTTGTACTTGGAGTGTTCCTATTCTCAGTGGTCTTCAGAACACAGCGtcacagagagaCAGAAGCATTTCGGCGAGTCGCTGCACTAAAGACCATCATGAACGCAACCTCACCAGGACACACATACGCAAGtcaAGGACCCATGGGAGCAGAGAATAAGGATTTCAGCAAACTGCAGAACTCCAGCGAAACTCAAGGAAACCTTACAAAACAAGAGGCCCAGTCTTATGAGAACGTTACAACGGTAATCTACAGTAATGAGGATAAAGTCAACTACTGCGTCCGTCAGGATGAAGATTATGTCACTCCTGATGCAGCAGATGAAGTGACAGAACCCGAAAAGACCACCTACCTTCATTCACATCACAACCTTACAGACAccgATGGAGAGTCATATGAAAACATGGACGGGTGTGTGTATGCTCATCCTCGCCAACCCACACTAAAGAATGCACTCAGCACTGAGGACGATGatTATATTAATCCTGAtgaagaggaaaaacacaacctggaacagacagatacagagTCCTATGAGAACATGAATGGCTCAGTATGTCCCAACACAGACGcacaaaccaacacacacactgtggatgAAGgcTGGTATGAGTGCATGGACAGAAGACAAAGAAGCGAGAAGCACACATAATACAGGATATTAGTGAGGGGTGAAAGGAaaccaacccacacacacacacacacacacacacacacacacacatacaatttaTTCATATCCAATAAGCAAGTAGTAATACAGGACATACATAATAGAGATcaatacagaatacagaaaaatacatcatcttACAGTTAAAACATGGACAGTATCAAGATTATCATGAATATAAATAGCAGCTCTTCACTATATATATGACGGCTGCCAGTGATAGCAGACACTGAACAGTATTTTGCTAGCTGTTTAGCTCTCCTTTTAGGCAGCGCTAGCAGCTGTAAGCCCCTGATGACTAGTCTGTGGACGTGTCCTAGGCTGCTGTATATGAAGACcaaaagtctacacttgtagCTGAGCTCTGAGATGTTCCTCAGGAGCAGTTGGTACTTGATAACCTTAGTCATGAAGGTTTCCTCGAGGCCTGTAAGATAAAATATCTGTCTGAACTCTtcatttacaacaacaacatctgGGTTATTAGCAGAGAGATTtgcaaaaatgaatgaatcattgttACGGAAGATGTACAATGTACAAGAAGGCTTGTCCAGTTTCACAGAAGAAGCTAAATGGATTGATATTTCTTTCGTTATGAAGTCTACTATTCTATTCTAAACCATCTATACAGGAATATTTCGACgtctgtacgcatataaacctCGTATTCGGAATacggctgcaacccgaataagGACCTTAAacggaatactgatgtgcatgtaaacgtagccattgAGTATAATGTTAGTGTGTAAGTGTCAAGTGTGTGAAGAGAAATACTGCCCTTTACTGGCGTGATGgaagatgaataaaatattcagcaTTTGTTCAGGCTAGCGTCAGTTAAGAATCCATTCAGGAattagctgtgttttattttaggaCCATGACACAGGAACTTCATTATAAACCATGCtgtaattttgtaaaatatcaTAATTCTGTTGTACGacttgtaatta
>XM_034301729.1
TCCTGTCATCTCTTGTCATCATCCTTGTATCAGtacgtaagtgtgtgtgtgtgtgtgtgtgtctgtatgaaGGTGCGAGCTCGGATCTTGAAACTTTACACAGGGATTCAGAAACATGACAGAGTCTgaagACAAGTTAGGTGAATACAACATGACCATGGCTCTGCAAAACAACTCATACACAGCAgtttcccGTCCAGATTGGCTGTTGTACGTGGTTCCTTCTATTGCCTTTGTACTTGGAGTGTTCCTATTCTCAGTGGTCTTCAGAACACAGCGtcacagagagaAAGCATTTCGGCGAGTCGCTGCACTAAAGACCATCATGAACGCAACCTCACCAGGACACACATACGCAAGtcaAGGACCCATGGGAGCAGAGAATAAGGATTTCAGCAAACTGCAGAACTCCAGCGAAACTCAAGGAAACCTTACAAAACAAGAGGCCCAGTCTTATGAGAACGTTACAACGGTAATCTACAGTAATGAGGATAAAGTCAACTACTGCGTCCGTCAGGATGAAGATTATGTCACTCCTGATGCAGCAGATGAAGTGACAGAACCCGAAAAGACCACCTACCTTCATTCACATCACAACCTTACAGACAccgATGGAGAGTCATATGAAAACATGGACGGGTGTGTGTATGCTCATCCTCGCCAACCCACACTAAAGAATGCACTCAGCACTGAGGACGATGatTATATTAATCCTGAtgaagaggaaaaacacaacctggaacagacagatacagagTCCTATGAGAACATGAATGGCTCAGTATGTCCCAACACAGACGcacaaaccaacacacacactgtggatgAAGgcTGGTATGAGTGCATGGACAGAAGACAAAGAAGCGAGAAGCACACATAATACAGGATATTAGTGAGGGGTGAAAGGAaaccaacccacacacacacacacacacacacacacacacacacatacaatttaTTCATATCCAATAAGCAAGTAGTAATACAGGACATACATAATAGAGATcaatacagaatacagaaaaatacatcatcttACAGTTAAAACATGGACAGTATCAAGATTATCATGAATATAAATAGCAGCTCTTCACTATATATATGACGGCTGCCAGTGATAGCAGACACTGAACAGTATTTTGCTAGCTGTTTAGCTCTCCTTTTAGGCAGCGCTAGCAGCTGTAAGCCCCTGATGACTAGTCTGTGGACGTGTCCTAGGCTGCTGTATATGAAGACcaaaagtctacacttgtagCTGAGCTCTGAGATGTTCCTCAGGAGCAGTTGGTACTTGATAACCTTAGTCATGAAGGTTTCCTCGAGGCCTGTAAGATAAAATATCTGTCTGAACTCTtcatttacaacaacaacatctgGGTTATTAGCAGAGAGATTtgcaaaaatgaatgaatcattgttACGGAAGATGTACAATGTACAAGAAGGCTTGTCCAGTTTCACAGAAGAAGCTAAATGGATTGATATTTCTTTCGTTATGAAGTCTACTATTCTATTCTAAACCATCTATACAGGAATATTTCGACgtctgtacgcatataaacctCGTATTCGGAATacggctgcaacccgaataagGACCTTAAacggaatactgatgtgcatgtaaacgtagccattgAGTATAATGTTAGTGTGTAAGTGTCAAGTGTGTGAAGAGAAATACTGCCCTTTACTGGCGTGATGgaagatgaataaaatattcagcaTTTGTTCAGGCTAGCGTCAGTTAAGAATCCATTCAGGAattagctgtgttttattttaggaCCATGACACAGGAACTTCATTATAAACCATGCtgtaattttgtaaaatatcaTAATTCTGTTGTACGacttgtaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301726.1 True 1881 mRNA 0.41 11 1962730 1970432
XM_034301727.1 False 1878 mRNA 0.41 11 1962730 1970432
XM_034301728.1 False 1872 mRNA 0.41 11 1962730 1970432
XM_034301729.1 False 1868 mRNA 0.41 11 1962731 1970432

Neighbor

gene id symbol gene type direction distance location
hspbp1 hspbp1,LOC107550267 coding downstream 11634 1934506 ~ 1951096 (-)
LOC113524085 NA coding downstream 30604 1916290 ~ 1932126 (-)
LOC113524042 NA coding downstream 87693 1872919 ~ 1875037 (-)
LOC113524043 NA coding downstream 101773 1858882 ~ 1860957 (-)
LOC117596466 NA coding downstream 138961 1821683 ~ 1823769 (-)
jmjd8 jmjd8 coding upstream 8826 1979258 ~ 1982556 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding upstream 33190 2003622 ~ 2007277 (-)
tmem220 tmem220 coding upstream 37574 2008006 ~ 2011992 (-)
tmem100a tmem100 coding upstream 426984 2397416 ~ 2402161 (-)
cbx2 cbx2 coding upstream 528547 2498979 ~ 2507141 (-)
G398925 NA non-coding downstream 3168 1956046 ~ 1959562 (-)
G398922 NA non-coding downstream 10546 1951921 ~ 1952184 (-)
LOC117596467 NA non-coding downstream 86310 1875199 ~ 1876420 (-)
G398751 NA non-coding downstream 236202 1726120 ~ 1726528 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding downstream 246267 1715036 ~ 1716463 (-)
G398942 NA non-coding upstream 27654 1998086 ~ 1998681 (-)
G398935 NA non-coding upstream 60736 2031168 ~ 2032632 (-)
G398953 NA non-coding upstream 69869 2040301 ~ 2040923 (-)
trnad-guc_31 NA non-coding upstream 277728 2248160 ~ 2248231 (-)
G399016 LOC102218968 non-coding upstream 292172 2262604 ~ 2347812 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 81672 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 370996 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 446416 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 500660 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 645094 1276278 ~ 1317636 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 384477 2354909 ~ 2377631 (-)
G399028 NA other upstream 401864 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 991281 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1046858 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 1176867 3147299 ~ 3196563 (-)

Expression


Co-expression Network