LOC113535306


Basic Information

Item Value
gene id LOC113535306
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13548417 ~ 13549215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301730.1
CCGGTTGATAAAGGTGGGAAACAGAAGGACGCTGAGGACTGTTCAGCATTTCTACTGCACTGTTACAAGAGGAGTAATGGCTTTAATCGGAAAATTAAGGCTCGCAGAGTCCCGCTGGAAAGGTTTGGTTAAAAGGACTCAGAGGAATGGTCTGTGCCACACCTTCTACAGCCCGAACGGGGATGAGTACACCGGAGAGTGGCGGGGTAACCTGAGGCATGGGCAGGGAACTCAGGTGTGGAAGAGAGCCAGAGCCATGTATGAAGGCGAGTGGAAACGGGATGCGCGAGACGGTTACGGGAAGCTCTACAAACTGCAGCCGTCTACTAAAGAATATTTAAGAGTTTATTCAGGGACCTGGAGGAACGATAAGAAGGAGGGGTTTGGGAGATGTTTCTACAGCTCGTCAGCGCGATATGAGGGGCAGTGGGTGGAGAATGAGAGGAGCGGATGGGGGAGGATGAGGTAtgagaatggagatgtgtatgAAGGAGAGTGGCTCAGGGATAAACCCCACGGCCAGGGCGTGCTGGCGCTCAGGAACGGGAACAGCTATCAGGGCTCCATGAAGGACGGGAAGAAACATGGACACGGACGCTTTGTCTACAGGGACAGGGGTCAGGTGTACCAGGGCTTCTGGGTAGATGATGCGCTGAAGTGTGGGACGGTGTGTGAGTGCGAcaggaagaaaacacacacaccacagctgcACCCTTTACCCCCGGTGATGCTGCAGGATGTTCAGGCTGTACTGAAGGAGGCACGCGACCAGTTCAAAAACAGGATTAATGCACTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301730.1 True 799 mRNA 0.53 1 13548417 13549215

Neighbor

gene id symbol gene type direction distance location
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding downstream 22317 13489949 ~ 13526100 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding downstream 105331 13409057 ~ 13443086 (-)
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding downstream 456671 13087487 ~ 13091746 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding downstream 602040 12937224 ~ 12946377 (-)
scamp3 scamp3,LOC106588184 coding downstream 622153 12915978 ~ 12926264 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding upstream 26469 13575684 ~ 13586550 (-)
hax1 hax1 coding upstream 41824 13591039 ~ 13599620 (-)
ubap2l ubap2l,LOC107599491 coding upstream 54112 13603327 ~ 13638125 (-)
tuft1b LOC108272645 coding upstream 97052 13646267 ~ 13678291 (-)
cgnb LOC108272895 coding upstream 139907 13689122 ~ 13726155 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 93620 13452399 ~ 13454797 (-)
G405144 NA non-coding downstream 181641 13366437 ~ 13366776 (-)
G405032 NA non-coding downstream 329937 13218279 ~ 13218480 (-)
G404997 NA non-coding downstream 407762 13140420 ~ 13140655 (-)
G404982 NA non-coding downstream 420761 13127399 ~ 13127656 (-)
LOC113535067 NA non-coding upstream 10674 13559889 ~ 13563949 (-)
G405353 NA non-coding upstream 51812 13601027 ~ 13605892 (-)
G405368 NA non-coding upstream 106190 13655405 ~ 13706542 (-)
G405386 NA non-coding upstream 186321 13735536 ~ 13735748 (-)
G405419 NA non-coding upstream 259268 13808483 ~ 13814892 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 3912 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 155584 13389916 ~ 13392833 (-)
G404999 NA other downstream 407302 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 968766 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 969616 12578729 ~ 12578801 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 6941 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 210546 13759761 ~ 13761557 (-)
npy npy other upstream 532157 14081372 ~ 14083846 (-)
G405588 NA other upstream 565404 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 926261 14475476 ~ 14479077 (-)

Expression


Co-expression Network