Item | Value |
---|---|
gene id | ctdp1 |
gene name | ctdp1,LOC107552301,LOC107550068 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047623.1 |
NCBI id | CM018569.1 |
chromosome length | 15305753 |
location | 14622681 ~ 14637333 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
ctdp1 | Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain. Predicted to be located in nucleus. Orthologous to human CTDP1 (CTD phosphatase subunit 1). |
description |
---|
PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase isoform X6 |
id | description |
---|---|
K15732 | CTDP1, FCP1; RNA polymerase II subunit A C-terminal domain phosphatase |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_034301734.1 | True | 3116 | mRNA | 0.46 | 10 | 14622681 | 14637333 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
zbtb22b | zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366 | coding | downstream | 7920 | 14598495 ~ 14614761 (-) |
epb41a | epb41,LOC107712606 | coding | downstream | 36439 | 14552044 ~ 14586242 (-) |
trnat-ugu_15 | NA | coding | downstream | 76503 | 14546106 ~ 14546178 (-) |
trnat-ugu_14 | NA | coding | downstream | 79392 | 14543217 ~ 14543289 (-) |
tmem222b | tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 | coding | downstream | 131418 | 14481937 ~ 14491263 (-) |
daxx | daxx | coding | upstream | 15011 | 14652344 ~ 14670040 (-) |
gnb3b | gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025 | coding | upstream | 222921 | 14860254 ~ 14867598 (-) |
si:ch211-264f5.6 | NA | coding | upstream | 260277 | 14897610 ~ 14917917 (-) |
cica | LOC108272903,LOC108433746 | coding | upstream | 293810 | 14931143 ~ 14964811 (-) |
LOC113534955 | LOC108272455,LOC108433744,LOC107753802 | coding | upstream | 436336 | 15073669 ~ 15136790 (-) |
G405707 | NA | non-coding | downstream | 237031 | 14378892 ~ 14385650 (-) |
G405681 | NA | non-coding | downstream | 293481 | 14256524 ~ 14329200 (-) |
G405701 | NA | non-coding | downstream | 307847 | 14313739 ~ 14314834 (-) |
LOC117596429 | NA | non-coding | downstream | 430926 | 14183486 ~ 14191755 (-) |
G405575 | NA | non-coding | downstream | 545531 | 14076442 ~ 14077150 (-) |
G405906 | NA | non-coding | upstream | 7520 | 14644853 ~ 14966111 (-) |
G405909 | NA | non-coding | upstream | 50690 | 14688023 ~ 14720906 (-) |
G405917 | NA | non-coding | upstream | 62935 | 14700268 ~ 14704312 (-) |
G405929 | NA | non-coding | upstream | 109515 | 14746848 ~ 14748447 (-) |
G405930 | LOC108272765,LOC107694750,LOC107751686,LOC107577321,LOC107694162 | non-coding | upstream | 112421 | 14749754 ~ 14753292 (-) |
tpbga | LOC108272337 | other | downstream | 143604 | 14475476 ~ 14479077 (-) |
G405588 | NA | other | downstream | 503023 | 14114619 ~ 14119658 (-) |
npy | npy | other | downstream | 538835 | 14081372 ~ 14083846 (-) |
s100a11 | s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 | other | downstream | 861124 | 13759761 ~ 13761557 (-) |
cks1b | cks1b,LOC108433716,LOC107753514,LOC106570108 | other | downstream | 1064050 | 13556156 ~ 13558631 (-) |
G405961 | NA | other | upstream | 330143 | 14967476 ~ 15013988 (-) |