ctdp1 (ctdp1,LOC107552301,LOC107550068)



Basic Information


Item Value
gene id ctdp1
gene name ctdp1,LOC107552301,LOC107550068
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14622681 ~ 14637333 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034301734.1
tgtctgtgtgcacgTGTTTTGAGAGCAGCAAGCAGAGCAGCTTGGCCGAGAAGACCAGAAGAGGCTCCACAGAAACAGGAAGCTGGTtctcatggtggatctggaccAGACTCTAATCCACACCACAGAGCAGCACTGTCAGCACATGTCTACCAAAGGAATTTTCCACTTCCAACTGGGGAGAGGGGAGCCCATGCTGCACACGCGCCTCAGGCCTTACTGCAAAGAGTTCCTGGAGAAGATTTCCAAGATGTATGAACTGCATGTGTTTACTTTCGGAAGTCGCCTCTATGCACACACCATTGCAGGCTTTTTGGATCCTGAAAAGAAACTTTTCTCACATAGAATCCTGTCTAGAGATGAGTGCATTGACCCGTTCTCCAAGACAGGAAATCTGAGAAATTTGTTCCCATGTGGCGACTCCATGGTGTGCATCATTGACGATAGAGAGGATGTGTGGAAGTTTGCTCCTAACCTCATTACTGTGAAGAAGTATGTCTACTTCAAGGGAACGGGTGACATCAATGCCCCACCCGGCTCACGAGAGGCCCAGCtggcaaaaaaaagtgcagGTAGCCTGGCGAGTCAAACTGTAGAGAACACCAGCACATCTGGATCATCAGCCGATGAGGGGAAGAATAACGGCCTCCGGAAACAGGACAAGGATAAAAAGTCTCTGCAGGACGAAATGTCAGTCTGTGTCCCTGACATTCAAGGAGCATCAGATAGCCAGAGAACTTCTCCTGATGGAAAGAGGACAGAAAAACCACATTTGAGTAATAAATCTGATATTAAAGTAGAGGAGTTGGGAGGCTTGGATAGGACGAAGCAGTCTGGTGAGACTGTAGACCAAGAGAATGTAACAGTAGCTGATGGTAATGACTCGGCTAAACCGGGATTACCACATAATAAAAACGATCAGCTCTTAGAAACCATAAAACCTAAAGAACCAGACGCAGATGAAGAGTGTTGCAGTACGGAGGAGAATGGAGACGGAGGATTAGACACTGACAGTGTCTGTGATGTGGATGAGGAGAGTTTTGGTGATAATGGATGTTCTGACAAGAAGGAAACCGAGACAGAGTCTCAGAACAGTGAGCAGTCTGGTGTCACCATGGGAGAGGAGTCTTTAGACCACAGCATGGtggatgaagaagaagaggaggaggaggaggaagacaCAGACCAGGACGATCACTTGATTTACCTACAAGAGATCTTGATGCGTATTCACAATGAGTACTACTCGCGCTACGAGGCTTACCTCCGGGGGGACAGCTCCGAGATGCCGGACATTCGTAAAATCGTCCCTGAGCTGAAGAGCAGTTCACTGGCAGGCACCACCATCGTCTTCAGTGGCTTGTACCCCACAAACTACCCCATGGAGCGAACACGAGAGAGCTACCACGCAAAAGCCCTGGGTGCCAAGATTAGCAAGAGCCTCGTGCTCAATGCCAAAGATCCAGACTGCACCACCCACTTAATAGCTGCACGTGCAGgtacGGAGAAGGTCCGGCAGGCCCTGGCCTGTAAGCACCTGCACGTAGTGAACCCTGATTGGCTTTGGGGCTGCCTGGAGCGGTGGGAGAGAGTGGAAGAGCAGCTGTTCCCGCTGAAGGAGGACTACACGAAATCACACAGaagtAATAGCCCATCACCATTTCCTGATGTTCAAGAGTCCTTCCCAGCGCCTGTTATTGACCCTGTTTCCATCCAGCCCAAGGGCCCGCTGGCTCCAGAGGTGCACACGTATGACTCTGTAACTGGGAAGTTGATCCGAAGAGGCCCTCAAGTGCCACGTCACCCCCAGAAATCATCTGTGACGCTGCCAGGAAATGAAGTGCACTTAAACTTTAGGGATTTGAGATTTCTGCAGCAGGAAGATGTTGACAGCTCAAGACCAGATGATGAGCAGCCTGCACCTTCACGCAGGAAACGACAGCCGAGTCTGTCTGAAACCATGCCTCTCTACACGCTCTGCAAGGAGGACCTTGACAGTATGGACAGAGAGGTGGATGATATTCTTGGAGAAGAAAGTGATAATGATAGTGAGggaaaagagaaggaggagagagtggaaggagaagaggaagatgaggaggCCAGCAGGCTGAGTGCTGAACCAGCAGATTACCAACAGGCCGAGGGCACGACCGTCAAAGACACATCATCAACATCCAAAGAAGAAAGCAGTCGGACTGGGAGCATACCGAGaGGCCACAAGAGAAAACTGCAGGACACCAGAGAAGACGACGATGACAAAGATGGAGACTTGGCCAGCCAGTCCAGTAAGGAGTCTAATGAGGACGGTAGTAGCTCAGAAGCAGATGAGATGGCCGCTGCCCTGGAGGCAGAGCTAAATGACTTCATGTGAGAAAAGACAGTGAGAAAAATGACAATGAATTGACCTTTCGTTTCCATCTCGTATGTTTCTACGGCCCGATTCATGCATGTCACCTCTACTATATGAATaagcgtgtgtgcgtgcgtgcgtgcgtgcgtgtgtgcgtgcacatgtgtgtgagcgtgtgtgtgtgtttattgtacCTAGAACAGCGGGtggataaatatttacaaagtgtGTAAACAAAGTGAATTATTGAGGTGTGATGCCAGCTATTTGACAAAgctgttaaacattttattgcattGGGCAGTGGATGGTTAGATTttgtttcacattaaaggttttacacaaaaataaataaataaataaaatgaatttgtgATAACTGCCAAAGACTATGACAGGCAGCTATATTTTTTCATAGGTTTTTGTTGTCCTCAatttctttttccactttttgtcTATGCACAAAAACCTTTTGGCACATTACAATGTTTTGTGAGGAGAATTAAGTTGAATTCTTTGCCAAACTGAGTGTTTAATTATCATTTCTGTTATTCTGTAGAATCACTGTAAACATTTAACTTAAAATCAGCTTCCTTTACAgtatgtggggttttttttgtgcttttatttttatgttcatttaaaaGTTGATGTATGATATTCTGCTTGTATATTCGATTTCATACTGCCTTTCCTTACTAACTACCTTTCCTtactaaacaaaatgtacaaaaaaaataaaggttttagAGATTGAACATGA

Function


symbol description
ctdp1 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain. Predicted to be located in nucleus. Orthologous to human CTDP1 (CTD phosphatase subunit 1).

NR:

description
PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase isoform X6

GO: NA

KEGG:

id description
K15732 CTDP1, FCP1; RNA polymerase II subunit A C-terminal domain phosphatase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034301734.1 True 3116 mRNA 0.46 10 14622681 14637333
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Neighbor


gene id symbol gene type direction distance location
zbtb22b zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366 coding downstream 7920 14598495 ~ 14614761 (-)
epb41a epb41,LOC107712606 coding downstream 36439 14552044 ~ 14586242 (-)
trnat-ugu_15 NA coding downstream 76503 14546106 ~ 14546178 (-)
trnat-ugu_14 NA coding downstream 79392 14543217 ~ 14543289 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding downstream 131418 14481937 ~ 14491263 (-)
daxx daxx coding upstream 15011 14652344 ~ 14670040 (-)
gnb3b gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025 coding upstream 222921 14860254 ~ 14867598 (-)
si:ch211-264f5.6 NA coding upstream 260277 14897610 ~ 14917917 (-)
cica LOC108272903,LOC108433746 coding upstream 293810 14931143 ~ 14964811 (-)
LOC113534955 LOC108272455,LOC108433744,LOC107753802 coding upstream 436336 15073669 ~ 15136790 (-)
G405707 NA non-coding downstream 237031 14378892 ~ 14385650 (-)
G405681 NA non-coding downstream 293481 14256524 ~ 14329200 (-)
G405701 NA non-coding downstream 307847 14313739 ~ 14314834 (-)
LOC117596429 NA non-coding downstream 430926 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 545531 14076442 ~ 14077150 (-)
G405906 NA non-coding upstream 7520 14644853 ~ 14966111 (-)
G405909 NA non-coding upstream 50690 14688023 ~ 14720906 (-)
G405917 NA non-coding upstream 62935 14700268 ~ 14704312 (-)
G405929 NA non-coding upstream 109515 14746848 ~ 14748447 (-)
G405930 LOC108272765,LOC107694750,LOC107751686,LOC107577321,LOC107694162 non-coding upstream 112421 14749754 ~ 14753292 (-)
tpbga LOC108272337 other downstream 143604 14475476 ~ 14479077 (-)
G405588 NA other downstream 503023 14114619 ~ 14119658 (-)
npy npy other downstream 538835 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 861124 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 1064050 13556156 ~ 13558631 (-)
G405961 NA other upstream 330143 14967476 ~ 15013988 (-)

Expression


ctdp1(ctdp1,LOC107552301,LOC107550068) Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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ctdp1(ctdp1,LOC107552301,LOC107550068) Expression in each Bioproject

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ctdp1(ctdp1,LOC107552301,LOC107550068) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network