si:dkey-222b8.1 (si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332)


Basic Information

Item Value
gene id si:dkey-222b8.1
gene name si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4884598 ~ 4905395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301766.1
agagagagagagagagagagagggagggagggagatgCTGGAGGAGGCTGGGAGATTCATATCGGCGTGGACAGAGAGCTGATGTGACAGCAGGGAGGGGGGGAAGCCGAAACTTGGATTTCTACCTCACTGTCCTGCTTGTGTTCATGTTGATCCCGGGCTGATGTcagaATGTCGGTGAACCCCCCCAGCAGTAACGATGCCTGCCTCAGCATCGTGCACAGTCTCATGTGCCACAGACAAGGCGGCGAGAACGAAGGCTTCGCCAAGAGGGCCATCGAGAGCCTCGTCAAGAAactgaaggagaagaaggatgAGCTGGACTCGCTCATCACGGCCATCACCACCAACGGGGTCCATCCCAGCAAGTGTGTCACCATCCAGAGGACGCTAGACGGAAGACTGCAGgtgGCCGGGCGTAAAGGTTTCCCCCATGTGATCTACGCTCGTCTATGGCGCTGGCCGGACCTTCACAAAAATGAGCTGAAGCACGTCAAGTTCTGCCAGTATGCCTTCGACCTAAAGTACGACAACGTGTGTGTGAATCCGTATCACTACGAGAGAGTCGTTTCTCCTGGCATCGTTGGCCTCAGCCTACAGAACACAGCTCCCTCCGGCAGGCTGATTAAAGAGGAATACACCCATGACTGCGTTCAGATGGACGTTCCTCCTGGTTTGCCTCCACAGTCAGACCACCAGGGGGCGATGAAGCTCCCTGCACCGGAGCATTACCCCCCACCGCTGCCACCTTTACAGATGCCCCCTGAAGCAGCCCGATGCCCTCCGCCTGCCACCCTCTACCCCAACATGCCCCTCTCCCCAACTGcaTCTGGCTCGATGATGTCCATGCAGGGTGGTCACAGTGAGGGTCTCCTGCAGATCGCATCCCCTCAGGCTCAGGTCATGGCCCCAACCCCTCCTCCCTCCACGCCCCCTCAGGCCCCGCCCACTCAGAACGGCTACAACggctccaaacacacacaggcacagggATCCTTTCACACTACTTGGACGGGCAGCAGCACGGCCTCTTACACTCCTATAGGACGCCAGCAGAGCAGCCGCGCCCACCAGCCTCCTCTCCACCACCCCCACTACTGGTCTCAGCATCACAGCTCGTCATCATTCCCTCCGCCAGTCTCCAACCATCCAGGGCCAGAGTTCTGGTGCTCCATTTCGTATTTTGAGATGGATGTTCAGGTTGGTGAAATGTTTAAGGTGTTGTCCAGTTGTCCCGTGGTGACGGTGGATGGCTACGTGGATCCATCCGGAGGAGATCGCTTCTGCCTCGGGCAGCTCAGTAACGTTCACCGTACTGAGGCCAGTGAAAGGGCCAGGTTACACATAGGTAAAGGCGTGCAGCTGGAGTGTCGAGGTGAGGGCGATGTGTGGATGCGATGTCTGAGTGATCACGCCGTCTTCGTTCAGAGCTACTACCTGGACAGAGAGGCAGGACGAGCGCCAGGGGACGCTGTCCACAAAATCTACCCAGGAGCCTACATCAAGGTGTTTGATCTGCGTCAGTGCCATCGGCAGATGCAGCAGCAGGCGGCCACGGCTCAGGCAGCGGCAGCGGCTCAGGCAGCCGCCGTGGCAGGGAACATTCCGGGTCCAGGGAGCGTCGGGGGCATCGCTCCTGCAATCAGTCTGTCAGCAGCCGCAGGGATCGGCGTGGACGACCTGCGCAGGTTGTGTATCCTGCGTCTGAGCTTCGTGAAGGGCTGGGGACCCGACTACCCGCgccacagcatcacacacactccctgctGGGTGGAGGTGCATCTCCACCGCGCCCTGCAGCTGCTGGACGAGGTGCTACACACCATGCCTCTGGCAGACCCTGGACCTTCTAACTGAGAGCAGGGAGAgataactacacacacaaacatgacacacactcacatacacacacacagacacacacagtgatcatATATCACACGCACTGAGCAGGCACGGTATAAGTCTGTGTTACAGTACTGTTTATAAGGCGTCCTGGTTGACTTTCCCTCATACCCCGAAAATGATAATAATCTATTGGGTATTTGTGAATTTGTACTTTTAACATTTGAGAAAGTCAAACACATGATGATGTTGCTAGGCAACAAGGAAATCGCGACTGTAAGGCTAacaatatagctagctagcatcacTAAGTCTTAAATACAGATGATGTAAAGGTGAAATGACAATGAAAACGGGACAATCTCATCGGGAACaccaacatttacctcagatgtgctggttaattactaaaaaaaaagactgtgtatggctaaaattacactttaatCACACTTAGCATAAACAACAAATAGAACTTTTACTGAAACATGTCAACATTGTGTCACAACTTCATAAACTCAGAGCCATCAGAGACTTTTAAAGTAGTGAATATCACAGACGTGGCTGTTTAGAGTGAATCATCTTGTAAGCACAGAAAACACGACCCACTTATACTTAGCATACATTACGCAAGATGAGAAGACAAATCCATCAGGAATaccaacatttacctcagatgtgatGATAAATTACTAAACACAGACAATTTACAACTAAAATTATCAAATGCGTTTGATGTTAAGTGTGAGATGGCTTTCTAAATAGCTAGCATTCTAACTACCTGGTACCTGCAAGTTAGCATGCcactagctagcttgctaacttagctagctgAATGAGGTAATGAATTTAGACCCTCGTGAACTGGCTACAGGAAACCCAATCTGAACAacatatttgaataattaaaaaaaaaaaacaactatacaTCTTATTGTTCCTATCTAATTTTATGCACAAATTCATCGACCATTTTAGCTGCAAAAAGAAACCGCATCATGTTGGAATACCTTCTGCGTGAGTCCGTCACCTGACATCTACGCTCAGGTTAAATCCAAAACCATAAAGGATTCTTCAGTTTTGTTTCTCTTAGGGGAACCCGTAATGGTTCTATGGAGAGACGTGTTTCTTTCTCAGAAAGAGGGCCAACTCGAACCAACTCTTTAGGAAGCTAGAAATAGATGAGGAACGCTTTTTATTGACTCGATCCTATTTTGCGTATAAAAATCTCTTAAGATGGCAGTCAGGGATTCAGTCTAGGGAAGTGGTAGGAGGACAAGGCGCTAAAGGAGTGTTAAGGACAGTACTGTAACGCAGCTTTACTGTTTATCCTTCATCGGATTCATCCAAATGCAATCTATGGAGTTGTTCCATAGGGATGGAATGTACTTTTTTGCAGAATAGatgtatgtatttaatttagCACTGCCTATCTTCTGATTAATGCAAGTTTTCTCTAGGCACGTGCCGATAATCAGTTATATATCACAGGATTGTATACTGTTATAGAAGACTACCCCTGTGCTCCACTCAGGAGGAGGCTGCCTAGGTAGGCCGTATTATGGGCACCTTGTAAGGTAAAACCTGTCCCATTTACCAGGCAGCATTCTGTTTACCAaacgagtttttttttttttttagagtcatttcattttaatggatAAATGTGATAATGTCCTAATCTGCAATAAATGATTAGTCAGTTATTGTGATACGAGAATTTGATATCGGCACATGCCTAGTTTTCACAGGGTTGAGTTCAGGGAAATAGCTTTACTGCccgtacactctcagaaatcaAAAGCTAATAAAccgtacctttccttgtcactggtaTACCTTTAGTATCTTTTCCCTGGGAAGgtgcatatagtgtacctttaaagctttactatattaattaaagataaaataGTGGTCCTTAAGCTCTAAACCAGGGTTCATGGACTGGTGGATACTAGCAGagtatttcagcagactgaaccacctaaatgaaaaaatactgtagcagaatcTGAAAAATGTGTAGCTCTGTGATGTTCTCTGTTACGGCTAATCCAATCACGTGCATTTATGGAAATTATTTAGCTGATGGTAGCTCATCGGACCACACACTAGCTAGAGAAATTAGCTTAGAAAggatagatttttcattttacttacAGCATAACTTGTTTAAAAAGAAGGTTGACAACAAAAACggaatgtttaaagacaaatggacagaaaagTATGCGATTGTCTCCCTGCACTCTGTTCAAAACCGATGTATGTCCTCTGTTCGGAGTCTGTGGCTCTAGTTGAAAGTGgaacatgaacatgaagtgCTGCTATGGAGCAAAACATAACCACATccaattgtcttatttatagccatgaatgAGCTGCACATTTCTTGTCGTAATTCATGTTGAAagagattttatgtaaatggaTCTTCACAAATTTTAGGTGAATACtctttcccccattttctccctaatttgggcTTGGCCAAATACGACAGCTTCCAGCAAgtttttttgaactgctgctcctACTGCATCACAAAGCCGTGTAACAcgctcggaggaaagcgctatctaccctcttccacatacaggagctcacagacgcccatgattggttggtgtcgctgtgattgacaagtAAGACAGAGtttgcccctcccacccagataGCACGGCCACTTTTATCTCTTAGACTCCCGGCCAGGGATCGCTGTGGCATCGTCTGGATTCAGACTCGTGATCTCTGGACGCACTTTTACTGTTGCACTAAAGGTAAAAATCAATGTAGCCATAAGCATCCACCCCAGGAAGAAGGAAAGGTACGGTTTCATACCTTCTTTTTTGAGAGTGCGCACAGGTCCAGATTTGCACATGGTTgaattatagtaataataataataataataataataataataataataatacaaaataatattcaCTAATACAGAATAATTCtactctctcacaaacacacacacacacacacacacacacacacacacacacacacatacacacacacatgacttcTGCAGGTTTGTTAAGTGTGTGATAATGCCCACACCTCAGAAGCCGGCTCCTTGAGGCCAAACTGTTCAGGAACTCTCTTCAGATGGAAAACAGAACAGACCTCGAAACCAGAACTCTCGCTATATCCGTGCTCTgtgttcctctgtgtgtgtggaagccACCTCCACTTCCTGTGCTCGTCCTGAGTGTGTCCGACGATCCATACGAGTGCAGCCTTCGagctcatttattttcatacgaaaaaaaaaaagaaaagatgccGAAACATTGTTCAGCTTTAAAATGGTGGTGTTGGTATTTGTGGTGCCGCAGTATGGTGTTTGTAAGCAAATCATCTGCCATGTGGTGTACACCAAAGCCTCAGAATACCTCATCGTAATCAAGCACGGACCCGGTGGATTTATGTTATAAGCCAAAAATGGGACATTATTTGCAGTCttcacctcacctcacacagTATCATTTAACGAAAAGGGAAAATAGGACCATAACGAACCCAGTAACTGacttaaagcatttattttgcttgagacatttatttacacttatttGCATCAGTGTTTCCTGACTGAAGTCCATGAGCCTGCACTGGATTACAGGAGTATCCTAAACGCTAGCAAGAATAATAAGGGGCAAATGTCACATCATAATACATGATATCAATCACCACCAAAAAATGTGAAGCCATAATCTGAAAATTTGTATGTTCAGAGATTTTTgcttataaaaaaatacaagtaaaaTTCATGTCAAATAAATTACTTATTACCATCAACAGCAACAGAGCTATTTAAGCACCGATCGCTATGTATCGTTATGTTCATATATAACGATATCACCCAGCTATAATCCCGGTAAAGTGTAACAATTAATGGTAGAGCTATTTCATGGTATACTGTTGTACCTGTATATCGTaccaaatgtcttttttttgtctagaATGCTTAGTTACCTTTAGATTAAAGCCTAGATTATGGCTTCCAACTCCAGATCTACCATCTGAAAAGCTACCTTTTTAGGGAAGATCATTCATTCTAACTTTATTGTACATGATTCATCTAACTAAGATTTTCAACAGCCGGACCATGAGTGTAGGATTTGTGCAGGAAGGAGAATAAACTGGAGGAATGTCCAGgaatgttttaaacaaaaatacactatTGTAAATACATCACAGTGAGTATTCAGTAAAACAGTATTGTATGTGCTTA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04501 SMAD4; mothers against decapentaplegic homolog 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301766.1 True 6100 mRNA 0.45 12 4884598 4905395

Neighbor

gene id symbol gene type direction distance location
syt11a LOC108272614 coding downstream 6954 4857220 ~ 4877644 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding downstream 34030 4840903 ~ 4850568 (-)
pex11b pex11b coding downstream 44810 4836850 ~ 4839788 (-)
sema4ab LOC108272624 coding downstream 136760 4709738 ~ 4747838 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding downstream 178165 4694466 ~ 4706433 (-)
snapin snapin,LOC106569889 coding upstream 3131 4908526 ~ 4910977 (-)
eepd1 eepd1 coding upstream 23083 4928478 ~ 4954246 (-)
eya3 eya3 coding upstream 134891 5040286 ~ 5052042 (-)
si:ch211-195b13.1 si:ch211-195b13.1,LOC108273319,LOC103036792,LOC108411161,LOC105892152,LOC104955017 coding upstream 148370 5053765 ~ 5059583 (-)
LOC117596451 LOC108261350,LOC108261581 coding upstream 214875 5120270 ~ 5127437 (-)
G400503 NA non-coding downstream 595 4881706 ~ 4884003 (-)
G400494 NA non-coding downstream 50615 4833754 ~ 4833983 (-)
LOC113543895 NA non-coding downstream 67303 4812661 ~ 4817295 (-)
G400477 NA non-coding downstream 98941 4779611 ~ 4785657 (-)
G400432 NA non-coding downstream 321234 4562211 ~ 4563364 (-)
G400500 NA non-coding upstream 5955 4911350 ~ 4918883 (-)
G400517 LOC108273316 non-coding upstream 106792 5012187 ~ 5012795 (-)
G400501 LOC108272940 non-coding upstream 125464 5030859 ~ 5035922 (-)
LOC113543905 NA non-coding upstream 334704 5240099 ~ 5242052 (-)
G400622 NA non-coding upstream 373508 5278903 ~ 5279314 (-)
polr3gla LOC108272317,LOC108415116 other downstream 249541 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 546171 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 724848 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 751676 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1650274 3224065 ~ 3234324 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 55707 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 222840 5128235 ~ 5140380 (-)
G400815 NA other upstream 682003 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1267593 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1466222 6371617 ~ 6374500 (-)

Expression


Co-expression Network