LOC113543865 (LOC108272957,LOC101471788,LOC102229941,LOC105937694)


Basic Information

Item Value
gene id LOC113543865
gene name LOC108272957,LOC101471788,LOC102229941,LOC105937694
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 10121543 ~ 10182766 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301768.1
tctctctctctctctctcagcagcaGAGTCTCCTCGCTGTCTTCAGCGAACTCGGACGCGCCGAACAACAGCCAGCGGATTTCCTTttttacataacacacacacacacacacacacatatatatatttcagccGTGAGGAGCTGCACACAGCTGAGCTTTAGCGCCTGACTGAGGAGATTTCCGACGCGCTGACAGAATGTCCAGTGAGGTCCAGCCGAGGCCCGATGACAGTCCCAATACGAGCGGAGGCAGTTCTGACGCCGAACAGAGAGACGTAGCCCCGTCGGTGCAGACTGAggaaagggagagggagagagagagggaacaggCTCCTCCAAAGAAAAAGGAGGCCAAGTTCTCCAGCAAGACACCTGCTAAACTCTCTACCAGTGCCAAGAGGATTCAGAAGGAGCTAGCGGAGATCACTCTTGACCCTCCTCCAAACTGCAGCGCCGGCCCAAAAGGAGACAACATCTACGAGTGGAGGTCCACCATCCTGGGTCCTCCAGGCTCCGTGTATGAAGGAGGAGTCTTCTTCCTCGACATCGCCTTCACTCCCGACTACCCCTTCAAGCCGCCCAAGGTGACGTTTCGTACCAGAATCTACCACTGCAACATTAACAGTCAGGGAGTGATCTGCCTGGACATCCTGAAGGACAACTGGAGCCCAGCGCTAACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTCCTCACAGACTGCAACCCTGCTGACCCTCTGGTGGGAAGCATCGCCACACAGTACCTGACCAACAGAGCAGAGCACGACAGGATAGCCAAACAGTGGACCAAGCGCTACGCCACATAGACCTTCCCATGATGCTTCAAAGCTCCATACCTTACCCTATCCCACCCTTATCCCACAACGAACTGTCCTTCGTTTCTTGTTGACTTGAACGCTTTTTTTATACAGTGTATGCATACTAAGAGCAAGTTGATCAGGATTGTACTTTTTTCCAATACACTGAATGTTGGCATGGTCATCAAAAgctttattatttgtaatgttaTATTGCTATTATGACCGTTCTGCTATTGTTTTGCATTATTGAGAAGTGCTCTGCCTGAATGAGTGGAGTGCACTTCATATCCAGCGGTTTTCTTTGGGCTCGGCGACTACGTCCATCATCGCCGAGTGAGTGGAAGATGCTCAAGACGACGTTAtcactgaatcttttttttttttttttttttcatgaagcGGACATTCTTTTCCCCCATAAACGATTGTTTTAACTCAGCTCCCCTCTTTGTTAAGTTGTATATGTGGAACACTATGGCACTGGCCTGTTTATCTCGAAATGCGTCGTAAAAGTTAAGCAGCCTGCAGCTTGCGTCGTGCAGCCAATGGCAGTTTGTTGTAAAATGCACATTGTGAGAGAAAATTCGACTGATACTCTGTAAGTAACTGAGTGAATAAATGATGTGTTGAGCTGAAA

Function

GO: NA

KEGG:

id description
K20217 UBE2E; ubiquitin-conjugating enzyme E2 E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301768.1 True 1462 mRNA 0.49 6 10121543 10182766

Neighbor

gene id symbol gene type direction distance location
ube2e1 ube2e1,LOC108272959,LOC105903698,LOC107743927,LOC107655879,LOC107565235 coding downstream 7610 10096124 ~ 10113933 (-)
rpl15 rpl15 coding downstream 37373 10080486 ~ 10084170 (-)
nr1d2b nr1d2,nr1d2b,LOC108273061,LOC106570286 coding downstream 51917 10055018 ~ 10069626 (-)
LOC113543808 rarb,LOC107103632 coding downstream 217738 9760884 ~ 9903805 (-)
adnp2b LOC108273309 coding downstream 410436 9701804 ~ 9711107 (-)
si:ch211-30b16.2 si:ch211-30b16.2,LOC108273305,LOC108441689,LOC107569868,LOC107686956,LOC107719841,LOC107708724,LOC107693995 coding upstream 21047 10203813 ~ 10214881 (-)
cited4a LOC108273161 coding upstream 229619 10412385 ~ 10415718 (-)
stmn1a stmn1,LOC108415666,LOC101477131,LOC102781761,LOC100709328 coding upstream 808946 10991712 ~ 10996996 (-)
LOC113543771 oprd1a,LOC108272459,LOC108411271,LOC105903674,LOC107689567,LOC107732912,LOC107595906,LOC107688080 coding upstream 1060739 11243505 ~ 11274312 (-)
LOC113543744 fam46bb,LOC108273300,LOC108413340,LOC105903734,LOC107712594,LOC107700817,LOC107737782 coding upstream 1201427 11384193 ~ 11397339 (-)
G403316 nkiras1,LOC102786732 non-coding downstream 26913 10090569 ~ 10094630 (-)
G403262 NA non-coding downstream 169219 9934989 ~ 9952324 (-)
G403164 NA non-coding downstream 224419 9896896 ~ 9897124 (-)
G403134 NA non-coding downstream 258229 9863033 ~ 9863314 (-)
G403086 NA non-coding downstream 356639 9764674 ~ 9764904 (-)
G403323 NA non-coding upstream 71 10182837 ~ 10183568 (-)
G403324 sf3a3 non-coding upstream 6405 10189171 ~ 10191189 (-)
LOC113543816 NA non-coding upstream 319545 10502311 ~ 10507050 (-)
LOC117596479 NA non-coding upstream 320523 10503289 ~ 10503361 (-)
LOC113543917 NA non-coding upstream 321027 10503793 ~ 10503874 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 705290 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 837050 9227395 ~ 9284493 (-)
G402673 NA other downstream 960073 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 2203850 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 2844761 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 1594603 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 1962832 12145598 ~ 12256372 (-)
G404644 NA other upstream 2248229 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 2332550 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 2387698 12570464 ~ 12570536 (-)

Expression


Co-expression Network