jmjd8 (jmjd8)



Basic Information


Item Value
gene id jmjd8
gene name jmjd8
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1979258 ~ 1982556 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034301787.1
gtttaGTGCACTTCATAAGGCTGTGAAATATTCAAACTGAACCCGGAAGTGCGATTTgaacagcacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgtctgagAGTTAAGCTGAACCATATGGAGTTCACTGTGTGGAATAAAGTTTTAATCTTCCTCCTGTTTCACTTTCTGGATTTAACACTCTGCTCTGAGCAGGATACCGGCGgctggggaCTGGACTCCAGTCTTGCTGATGAAGGGATCTGCAACATCGACATCAGAGACGCCAcaacgatcacacacacacagtttctacaggaATACGCCTACGCTAAGCCCGTAATACTAAGAGGAGTTACAGACAACACAAAATTCCGCTTCCTGTGTTCCAAGCCGAGTCTGCTGAGGGAGTACCGGGACAAAACAGTCCGCCTGAGCACGgccaacacacactcctacaggaaagTGGACGTGCGGTTTGAAGAGTTCGTGACGTCGCTGTTGACCCCTCAGTCTGAAGACATCTTGGGCAGCGataCGCTCTACTTCTTTGGTGATAATAACTTCACTGAGTGGCATCCTCTGTTTGAGAAGTACAACGCTCCGCCTTACAGCCTGCCACACACCAGTCCAGCGTACAGCTTCGGCATCGcagGTCCAGGTACCGGTGTTCCCTTCCACTGGCACGGTCCGGGATACTCAGAGGTCATCTACGgcagaaagcgttgGTTCCTGTATCCTCCTGATCAGGCCCCGGAGTTCCACCCcaatcacaccaccctgtcatggaTCACACACTCGTACCCTAATCTGGAGGAACACAACACACCGCTGGAGTGTACCATCAGACCAGGagaggtgctGTATTTCCCAGATCGATGGTGGCATGCTACTCTGAACCTAGACACCAGTGTTTTCATCTCCACTTTCCTGGGCTGAACACTAACCAtcttcaacatcatcatcatcatcatcatcatcatcaacattcCAAAAGAACCAATCAGAGTTCTTCACATAGTGACATCATTTCTGGGGCACTAATCACATTGTGGCAGGATTTCTCATGCACCAATCAGCTTCTCATTCAGTGACACTGGACCAACAAAAGGACCAATCATGATCGTTCTGTCGAGTGGACAAACGGACCAGTCACATCTCCTTATCTAGTGACATCATAATCCCAAGAGGACCAATCAGATCGGACTAATAATTATTCCTACCGAGCTGAAATAGACATGATTTGAAtaaattcatctttttttatctgaaa

Function


symbol description
jmjd8 Orthologous to human JMJD8 (jumonji domain containing 8).

NR:

description
PREDICTED: jmjC domain-containing protein 8

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034301787.1 True 1260 mRNA 0.48 10 1979258 1982556

Neighbor


gene id symbol gene type direction distance location
LOC117596454 LOC108273013 coding downstream 8826 1962730 ~ 1970432 (-)
hspbp1 hspbp1,LOC107550267 coding downstream 28162 1934506 ~ 1951096 (-)
LOC113524085 NA coding downstream 47132 1916290 ~ 1932126 (-)
LOC113524042 NA coding downstream 104221 1872919 ~ 1875037 (-)
LOC113524043 NA coding downstream 118301 1858882 ~ 1860957 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding upstream 21066 2003622 ~ 2007277 (-)
tmem220 tmem220 coding upstream 25450 2008006 ~ 2011992 (-)
tmem100a tmem100 coding upstream 414860 2397416 ~ 2402161 (-)
cbx2 cbx2 coding upstream 516423 2498979 ~ 2507141 (-)
LOC113523971 LOC108272994 coding upstream 535235 2517791 ~ 2524179 (-)
G398925 NA non-coding downstream 19696 1956046 ~ 1959562 (-)
G398922 NA non-coding downstream 27074 1951921 ~ 1952184 (-)
LOC117596467 NA non-coding downstream 102838 1875199 ~ 1876420 (-)
G398751 NA non-coding downstream 252730 1726120 ~ 1726528 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding downstream 262795 1715036 ~ 1716463 (-)
G398942 NA non-coding upstream 15530 1998086 ~ 1998681 (-)
G398935 NA non-coding upstream 48612 2031168 ~ 2032632 (-)
G398953 NA non-coding upstream 57745 2040301 ~ 2040923 (-)
trnad-guc_31 NA non-coding upstream 265604 2248160 ~ 2248231 (-)
G399016 LOC102218968 non-coding upstream 280048 2262604 ~ 2347812 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 98200 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 387524 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 462944 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 517188 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 661622 1276278 ~ 1317636 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 372353 2354909 ~ 2377631 (-)
G399028 NA other upstream 389740 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 979157 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1034734 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 1164743 3147299 ~ 3196563 (-)

Expression



Co-expression Network