pip4p2 (tmem55a,LOC107702130)


Basic Information

Item Value
gene id pip4p2
gene name tmem55a,LOC107702130
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7927445 ~ 7938210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301795.1
ATTGTGTTTGAGTGAATTGCTACTTTTGCAGGATCCACATCCTGCCTCACTAGTTCACTTGATAAATATGACTTGTGAACACGACTGTTGCACAACATCTTCCTGTTCCAGCGCTGTGTTACTGTTGCAACAGTTCCTCACAGTATGGCTGAAAACAAACAACTAGTTTATTATAgatgtgaggggaaaaaaactaatTACATTGTTTGAAatgcacttttttgtttttatagaaaACTATGCATTGTGGAGTGTTAGAAACCATATACAACTTGACAGGGAAGAGTAgatcattaataattaagtattatttttacCTACATTACCCTCGTAACCCCATTGCAAAACCATAGAAACAAAGTCTGTACACCAAAATGCATTTTGGTTAAATTGGACATTGTGTACActtcatttttggctgaatgAGTAAACACAAGGCCAGGCCTGGCTCAACTGCTGAATCTGAAGTTGATGTGAGAGATTGTATTAAATCATGACACTTCCTTAATCCATTTAGCTTTTATAGTGAAAGTCTAGCCTACTAGTATATGGCTTAGAGTAGGTATAAATTCAATCTACAAGCCAATCCTCAGCTGAGCTTCAGTCTGAGAACAGACAAAAGGTTGAAATATAGGAGTAGACAGCTTGTTGTTTCATGCTTTATGTATGGTATATGTAACATGCAATGCatagcattttctttttaaagacaCCTAACGACATCTGTGTtaaacttatatttatattccgTCATTTACACACTGACCTAACCCCAGTTTAGGGTATTACTGATATTATAATGATCCTTGGTCTAGACTTCAAAAGTTCTCATTCCCCCCTTGGCACAATATTCAGTTATTAGACAAGCCAAGCTTGTAATGCAAGATTTAGGTCATTTTCATAATCCAGTATTTCGCTGTTCAGTACACTAAAACCTCACACAATACACTCCattattggaaaaataaaatattgtgatcCTGActgttttgtcatattgcccctGTTGCTCGTTCATACTGAGACAGttctacatactgtacataaatcAATAATTAGTAATCTTAACAAATGTGTTCCTTCCTCTCTGTTATCACTGTTTGTAAATAACAGAATGAGAGAGGCTATGTTTGCTTATGATGGCATGGACAGTAGAGTTGAGTGAATCATTATACTGTGTAGCTTTACACTGTAATTTAGGATGTTTGAAGTGTAGAGTTTAACCTGTGATTGCGTTAAActaacagtgctgttgaattctcaaagctgattggttatggctctgacagtagattACACAGGTTTAAATTCAGGCACTCATGCtaatattttagtatttctatagtaaaagctTACAGGGGGAGTTATATGGCAGACTctacacataaacagattaaaaaaacaagtaaatgctgatatggtaaagttttctgtgagaagtttATTTTAACGTTAATGTAAAAAgttgtaactttacattttctgacacaggaaagtgttcggaactttgtggtttctcggtaccATGAGTAGCTGCAATTATTTGTCTCATTTACTtacaaggagaaagaaaaaagataggctgctgagggaatgacATTAGCTtctgtaacCCGAGCTTCCTCCCCCATACACAGCCATTGCCAGTCCTGATACAGGAGGAGTGCCAGTCATTAACTGCCGAGTGTGTCAGTCTCTCATAAACCTGGATGGGAAGCTCCATCAGCACGTTGTGAAGTGTACGGTGTGCAATGAGGCCACGCCAATCAAAAACCCACCAGCTGGGAAAAAGTATGTCAGATGTCCCTGCAACTGCCTGCTAATTTGTAAAGACACATCCCGGAGGATAGGATGCCCTCGACCCAACTGCAGACGGATTATCAACCTGAGCCCAGTGATGGTGATCCCAGAGGAGCAACCTGCACAGCCAGCACTTCCTATTCAGCCCGAAGGCCTGCGTGTGGTGTGCGGCCACTGCGGCAACACGTTCCTCTGGATGGAGCTCCGATTTAATACACTGGCCAAGTGTCCACATTGCAAAAAAATCTCTTCTGTTGGCAGTGCTCTACCCAGGAGACGCTGCTGCGCCTACATCACAGTAGGAATGATCTGCATTTTCATCGGAATTGGACTAACAGTTGGAACCCAAGAGTTTGCCAGCAGGTACCATGCTACCTACGTGTCATGGGCCTTTGCGTATCTGCTCGGTCTTATCTGCCTGGTACGGGCCTGCTACTGGGGAACGATTAGAGTCAGCTATCCAGAGAACACCTTTGCATAGATGAAGTGTCCGTGATCATTCATTTAACCCTTTTAGGATTTAATTTTATCCTGATTTTAACAGGTGTACATTTGACTTGTCATTCTATGTAGGCGAGCTATAACCGAGGCTGGAAATTTACGCATTATATTCTGATCGATTGggtgtaaaatatatttatatgtaaattgtCTGACTGATCAAATATTTAAAGTATGTGGAAATCAGCATTGGGAAATGATATTTTGATCATTTGGAAGAATTCAAGTTTGGTACGTATGCCTCATGGATTGTTGTAACTCCTACTGgatagactgtgtgtgtgctgcgttTTGTTAACGACTTGACCAAAATGAACAATTTGTCCATTGCACTACAGTTTTATGCAAATATCCTGTTCTTTTTGCTGCTAGTTGTCAGCTGTAAAAAAGCTGCAAGTTGTTAAGTATTAAAAGCTGCCCACTCTAAACAAGGTACTgtgttacatttatataatctTACATCTTACATGTGCCAACATTTGTGTTCATATCTCTTAGGGAAGAAAATTTATCTCTGCTCTTAAATCCATATTGTTGGAGCCGTACTGTGAGAGATTATTGCGGCTTTTCAGAGTAATTAAAAACGGCATGCTTA

Function

NR:

description
type 2 phosphatidylinositol 4,5-bisphosphate 4-phosphatase

GO: NA

KEGG:

id description
K13084 TMEM55; phosphatidylinositol-4,5-bisphosphate 4-phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301795.1 True 2896 mRNA 0.39 7 7927445 7938210

Neighbor

gene id symbol gene type direction distance location
bag6l bag6,LOC107687076,LOC107745707 coding downstream 69246 7844463 ~ 7858199 (-)
abcf1 abcf1,LOC107745711,LOC107691519 coding downstream 107734 7804783 ~ 7819711 (-)
ppp1r10 ppp1r10,LOC107709274,LOC107745712,LOC107691520 coding downstream 128780 7788909 ~ 7798665 (-)
agr2 agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756 coding downstream 143384 7781915 ~ 7784061 (-)
khdrbs1b khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640 coding downstream 171384 7744824 ~ 7756061 (-)
smap2 smap2 coding upstream 456313 8394523 ~ 8417397 (-)
col16a1 col16a1,LOC108272916 coding upstream 513876 8452086 ~ 8544860 (-)
adgrb2 adgrb2 coding upstream 676795 8615005 ~ 9005331 (-)
lratd2a LOC108272401 coding upstream 1643002 9581212 ~ 9582892 (-)
fam91a1 fam91a1,LOC107724353,LOC107702086 coding upstream 1648098 9586308 ~ 9612307 (-)
G401835 NA non-coding downstream 99782 7815999 ~ 7827663 (-)
G401813 NA non-coding downstream 185688 7739349 ~ 7741757 (-)
G401812 NA non-coding downstream 188201 7738610 ~ 7739244 (-)
G401811 NA non-coding downstream 189003 7735631 ~ 7738442 (-)
G401815 NA non-coding downstream 219254 7707862 ~ 7708191 (-)
G402090 NA non-coding upstream 383946 8322156 ~ 8324199 (-)
G402120 NA non-coding upstream 482177 8420387 ~ 8448303 (-)
G402122 NA non-coding upstream 495634 8433844 ~ 8436904 (-)
G402129 NA non-coding upstream 511285 8449495 ~ 8508126 (-)
G402142 NA non-coding upstream 583148 8521358 ~ 8522044 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 9752 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 650663 7254433 ~ 7276782 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 1552945 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 1752185 6172988 ~ 6175260 (-)
G400815 NA other downstream 2337698 5587398 ~ 5589747 (-)
G402673 NA other upstream 1205660 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 1289185 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 1448785 9386995 ~ 9416253 (-)
si:ch73-347e22.4 NA other upstream 3839159 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 4207388 12145598 ~ 12256372 (-)

Expression


Co-expression Network