hspbp1 (hspbp1,LOC107550267)


Basic Information

Item Value
gene id hspbp1
gene name hspbp1,LOC107550267
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1934506 ~ 1951096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301808.1
TGTGTATGTGCGCATGCGCGGTACGAGCTCCAGTGATGGCGGCTGCTCGTGTGATCCAGAGTCGCTGAGAAAGTTCCAGATTAAACCTCATCAGTGTTTATTAGCGGTGTGATGGAGCTCTACTCAGAGTAACTACACCCTTATACACCATCATACACCATCATACACCAGCTCTGATTCACGaTGGCAGAAGGAAACAGACGTCAACCTCAGAATTTGCAGGGAGTCCTGCGATTGGCTGTTGAAGCTGGCTCCGCCTCCGATGGCTCCGCCCCAAACGAGCCCATGTCTCAGGAGaggatcCAGTTCCTGCGGGGAGCCCTGTCCGAGGTGTGTAAGGGTCAGCTGGACGAGGTGGAGCAGATGAAGcggtgtgtgtcagtgctgatgCAGGACGAGGGAGAAGGAAGAGAGGACGAAGAGGACGAGGACGAGAAAGAGGCGGCGCTGGAGATGCTGTGTGACCTGTGTGACAACCTGGACAACgcaagagaccTGATGAAGCTGGGCGGGctggacgtgtgtgtgtctcggtgtgtgtgtcacactgaGGCAGGGTTGCGGTGGCGAGCGGCTGAGCTGTTGGCCTGCTGCGCTCAGAACATGCCCGAGGTGCAGCTGTACTTgctccagcagggggcgctacacacactgctgcagctcACTGACCACGACCCACATCCCACTGTGCGCGTCAAAGCACTCTACGCCGTGTCctGCCTTGTGCGGGAACAGGAAGTGGGCCTGCGTGACTTCCTGTCACATGACGGATTCTCCGTGCTGATGAGGGGGATGCAGTCGGACTGCGAGAAACTGCGCACCAAATCAGCCTTCCTGCTGCTCAACCTGCTGACCAGCCACCCCGAGCACAGAGatacAGTGCTGTGTATGGGGATGGTACAGCAGTTAGTAGCAGTGCTGCGATCTCCGCACTCCTCTGTACATGAACACGTACTTGGCGTCCTCTGCTGtctGGTAGAGGACAGTGAGCGgggtgtgtgtgactgtaaagAACCCTCTCTAGGTCTGGAGGAGCTGCTGAACCAGAGGATACAGGAGCTGCAGGGTCGAGAGGAGAGCCAGGAGGAGGTGGAGTTTTGTGAGCGATTGCGAGCGGCTTGTTTCCGAGCTCAGCCTCAGGAGGATAACGCAATGGATCGCTGAGTTCCTATTGGTCGACATCGGTCACTGCCGTGCAGCGATTGGCCAGGGTGAAGGAcgtcatgtatttttttttttttcccgcccTGACAGAAAAGAGACTGAGAAAAGACAAGATCTTGCttaatttaacacacacacacacacacacacacacttggaacATATTGGATTTCTTAcaaagtttgtgttttttgagaTCTGTTTATGGACACAAAGTACATAAATTTTTGTAGCCACAGTAATGAGCAGAGTGTGCAAATTGTACATTAAATCCATGCTGTTTTtcccatttacacacacacacacacacaccgcacacacacacacacacacacacacacacacacagtgcacactgTAAATCCAGGAAGTGAGTTCAAATGCTTAATGAGTGACTAGTTTTGCACACACATCATggtgtttttattattcctgtTCTCACATATTCCACATGCCTTATCATGTGTCTCCTGTCTGATTGGATTCAGGTAAAGATATTAATCACATGAGTAACTGGTTGCTGCACTGAAATCTGATCGCTCTTATCACATGACATCTCCAACTGCATCTAACTGGCCAGGTCACTTTATTTATGCATCGCGTGCTGTACGATAACCTCATGTAAACTCCAAACCACAATGCAATAAagtagaaagaaaatgaaatgaaaacaacaaAGAGCGATCaaagacaggacaaaaaaaaaaaa
>XM_034301809.1
TGTGTATGTGCGCATGCGCGGTACGAGCTCCAGTGATGGCGGCTGCTCGTGTGATCCAGAGTCGCTGAGAAAGTTCCAGATTAAACCTCATCAGTGTTTATTAGCGGTGTGATGGAGCTCTACTCAGAGTAACTACACCCTTATACACCATCATACACCATCATACACCAGCTCTGATTCACGaTGGCAGAAGGAAACAGACGTCAACCTCAGAATTTGCAGGGAGTCCTGCGATTGGCTGTTGAAGCTGGCTCCGCCTCCGATGGCTCCGCCCCAAACGAGCCCATGTCTCAGGAGaggatcCAGTTCCTGCGGGGAGCCCTGTCCGAGGTGTGTAAGGGTCAGCTGGACGAGGTGGAGCAGATGAAGcggtgtgtgtcagtgctgatgCAGGACGAGGGAGAAGGAAGAGAGGACGAAGAGGACGAGGACGAGAAAGAGGCGGCGCTGGAGATGCTGTGTGACCTGTGTGACAACCTGGACAACgcaagagaccTGATGAAGCTGGGCGGGctggacgtgtgtgtgtctcggtgtgtgtgtcacactgaGGCAGGGTTGCGGTGGCGAGCGGCTGAGCTGTTGGCCTGCTGCGCTCAGAACATGCCCGAGGTGCAGCTGTACTTgctccagcagggggcgctacacacactgctgcagctcACTGACCACGACCCACATCCCACTGTGCGCGTCAAAGCACTCTACGCCGTGTCctGCCTTGTGCGGGAACAGGAAGTGGGCCTGCGTGACTTCCTGTCACATGACGGATTCTCCGTGCTGATGAGGGGGATGCAGTCGGACTGCGAGAAACTGCGCACCAAATCAGCCTTCCTGCTGCTCAACCTGCTGACCAGCCACCCCGAGCACAGAGTGCTGTGTATGGGGATGGTACAGCAGTTAGTAGCAGTGCTGCGATCTCCGCACTCCTCTGTACATGAACACGTACTTGGCGTCCTCTGCTGtctGGTAGAGGACAGTGAGCGgggtgtgtgtgactgtaaagAACCCTCTCTAGGTCTGGAGGAGCTGCTGAACCAGAGGATACAGGAGCTGCAGGGTCGAGAGGAGAGCCAGGAGGAGGTGGAGTTTTGTGAGCGATTGCGAGCGGCTTGTTTCCGAGCTCAGCCTCAGGAGGATAACGCAATGGATCGCTGAGTTCCTATTGGTCGACATCGGTCACTGCCGTGCAGCGATTGGCCAGGGTGAAGGAcgtcatgtatttttttttttttcccgcccTGACAGAAAAGAGACTGAGAAAAGACAAGATCTTGCttaatttaacacacacacacacacacacacacacttggaacATATTGGATTTCTTAcaaagtttgtgttttttgagaTCTGTTTATGGACACAAAGTACATAAATTTTTGTAGCCACAGTAATGAGCAGAGTGTGCAAATTGTACATTAAATCCATGCTGTTTTtcccatttacacacacacacacacacaccgcacacacacacacacacacacacacacacacacagtgcacactgTAAATCCAGGAAGTGAGTTCAAATGCTTAATGAGTGACTAGTTTTGCACACACATCATggtgtttttattattcctgtTCTCACATATTCCACATGCCTTATCATGTGTCTCCTGTCTGATTGGATTCAGGTAAAGATATTAATCACATGAGTAACTGGTTGCTGCACTGAAATCTGATCGCTCTTATCACATGACATCTCCAACTGCATCTAACTGGCCAGGTCACTTTATTTATGCATCGCGTGCTGTACGATAACCTCATGTAAACTCCAAACCACAATGCAATAAagtagaaagaaaatgaaatgaaaacaacaaAGAGCGATCaaagacaggacaaaaaaaaaaaa

Function

symbol description
hspbp1 Predicted to enable adenyl-nucleotide exchange factor activity. Predicted to be active in endoplasmic reticulum. Is expressed in optic tectum and solid lens vesicle. Orthologous to human HSPBP1 (HSPA (Hsp70) binding protein 1).

NR:

description
PREDICTED: hsp70-binding protein 1

GO: NA

KEGG:

id description
K09562 HSPBP1, FES1; hsp70-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301808.1 True 1873 mRNA 0.51 8 1934506 1951096
XM_034301809.1 False 1867 mRNA 0.51 8 1934506 1951096

Neighbor

gene id symbol gene type direction distance location
LOC113524085 NA coding downstream 2380 1916290 ~ 1932126 (-)
LOC113524042 NA coding downstream 59469 1872919 ~ 1875037 (-)
LOC113524043 NA coding downstream 73549 1858882 ~ 1860957 (-)
LOC117596466 NA coding downstream 110737 1821683 ~ 1823769 (-)
LOC117596405 NA coding downstream 124653 1808522 ~ 1809853 (-)
LOC117596454 LOC108273013 coding upstream 11634 1962730 ~ 1970432 (-)
jmjd8 jmjd8 coding upstream 28162 1979258 ~ 1982556 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding upstream 52526 2003622 ~ 2007277 (-)
tmem220 tmem220 coding upstream 56910 2008006 ~ 2011992 (-)
tmem100a tmem100 coding upstream 446320 2397416 ~ 2402161 (-)
LOC117596467 NA non-coding downstream 58086 1875199 ~ 1876420 (-)
G398751 NA non-coding downstream 207978 1726120 ~ 1726528 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding downstream 218043 1715036 ~ 1716463 (-)
G398732 NA non-coding downstream 242590 1691472 ~ 1691916 (-)
G398730 NA non-coding downstream 254824 1677188 ~ 1679682 (-)
G398922 NA non-coding upstream 825 1951921 ~ 1952184 (-)
G398925 NA non-coding upstream 4950 1956046 ~ 1959562 (-)
G398942 NA non-coding upstream 46990 1998086 ~ 1998681 (-)
G398935 NA non-coding upstream 80072 2031168 ~ 2032632 (-)
G398953 NA non-coding upstream 89205 2040301 ~ 2040923 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 53448 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 342772 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 418192 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 472436 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 616870 1276278 ~ 1317636 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 403813 2354909 ~ 2377631 (-)
G399028 NA other upstream 421200 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 1010617 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1066194 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 1196203 3147299 ~ 3196563 (-)

Expression


Co-expression Network