LOC113535067


Basic Information

Item Value
gene id LOC113535067
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13559889 ~ 13563949 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403560.2
TTTATGGTTTTTGTTCCCTTCCAGGATCTCCTGCTCGGCGTTCCCTGCTGCTGCGGGCGGTGTGATGCTGCAGATTTACAGACGTCTGGCTGTCTGGGTGACAACACTCTTCTCCACAAGTCTCTGATGAAGAGAAAGATGGATTAGTGAAAACTGGATACAACATAAATATGCTACTCttgagatatcagtgatcctgaccccttctgctccccggggttgccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403560.2 True 225 lncRNA 0.50 3 13559889 13563949

Neighbor

gene id symbol gene type direction distance location
LOC113535306 NA coding downstream 10674 13548417 ~ 13549215 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding downstream 33789 13489949 ~ 13526100 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding downstream 116803 13409057 ~ 13443086 (-)
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding downstream 468143 13087487 ~ 13091746 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding downstream 613512 12937224 ~ 12946377 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding upstream 11735 13575684 ~ 13586550 (-)
hax1 hax1 coding upstream 27090 13591039 ~ 13599620 (-)
ubap2l ubap2l,LOC107599491 coding upstream 39378 13603327 ~ 13638125 (-)
tuft1b LOC108272645 coding upstream 82318 13646267 ~ 13678291 (-)
cgnb LOC108272895 coding upstream 125173 13689122 ~ 13726155 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 105092 13452399 ~ 13454797 (-)
G405144 NA non-coding downstream 193113 13366437 ~ 13366776 (-)
G405032 NA non-coding downstream 341409 13218279 ~ 13218480 (-)
G404997 NA non-coding downstream 419234 13140420 ~ 13140655 (-)
G404982 NA non-coding downstream 432233 13127399 ~ 13127656 (-)
G405353 NA non-coding upstream 37078 13601027 ~ 13605892 (-)
G405368 NA non-coding upstream 91456 13655405 ~ 13706542 (-)
G405386 NA non-coding upstream 171587 13735536 ~ 13735748 (-)
G405419 NA non-coding upstream 244534 13808483 ~ 13814892 (-)
G405420 NA non-coding upstream 251949 13815898 ~ 13872428 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 1258 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 15384 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 167056 13389916 ~ 13392833 (-)
G404999 NA other downstream 418774 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 980238 12579580 ~ 12579651 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 195812 13759761 ~ 13761557 (-)
npy npy other upstream 517423 14081372 ~ 14083846 (-)
G405588 NA other upstream 550670 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 911527 14475476 ~ 14479077 (-)
G405961 NA other upstream 1403527 14967476 ~ 15013988 (-)

Expression


Co-expression Network