LOC113535190



Basic Information


Item Value
gene id LOC113535190
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12663011 ~ 12677646 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XR_003403574.2
tttttctctccatcagTCTCTCCCTCATGCTCTCCCCTCCCACCTCTTTACGCACTTGCACTCgattacacacatgcatacacccTTATTGTCTCCCCTCTTACACGCACAGCtgtctcatgctctctctctcctctccttctcacGGCCACAGAGTCATCCACAGGGATTATTGTGGCGCTTCTCGTCCTGCCTGGCAGCATTGCTTGTGTTCCTTCGTCCTAGACTGAGAAACCTGACTGACTCCTCTGCTTGCTGACTATCTGCTCAAGCTTTTCCTTCACCTCATTTGGGATTTTCACCTCTTGCAAGAATTGAGGATGTACAGAAATCTTTACGGCATCTACGTATGAAGCGAAGAAGGACGAACTTCtgaatggacagatgaaacagacatgaggaaaaatgtGGCAGGAAGTGTGAAAGGGAGAAGGTGAGGATaaagtacagagagagagagagagagagagagagagagagagaggggcatcTTAGGACTCAACTGAGATTACATATGGGTGGATGCAAGGATTAGCAAAATCGTGGGGGGAAAAagtgaagaaataaagaatgacaGAGAAGGAATGACAGCAGATCGGATTTGCCTCCCTCCTGAACTAGGCTGGTTTACTCTGAACTCTGGGGTCCAGATTGAGAATGTGCAGAACATACAGCCTGGAGGTAGGGGAGCCAGGCCATGTTCGCTTGACAGCTACACAGGATGAGATCACCGGGACTGAGCATCAGACAAAGATAAGTATAAAATCTATAagtataaaacacttttttttaccaTTAATCAAAAGACAGTTAAGCATCATTCTGCTGGCTACTGCTATAGCACAGCAAAGAGTATTTTTCTGTTCAAAGGAAAGAGCTTGCATTCTATTTCATAAAATTCATCaacaatccacacacacacacacacacacaaatgcacagtcATCTACTGGGGGCACTCCATCTAATAACCTGGACTGCAACAGCGGGTGAAATAGAAGTCTCATAGTACTTGATGACCTCCTTTTTAAGCTAGACCCAGGGTGGggttttcattaaaattaattctTTTACCTGATGGCTGTCTGATAGAATACTTAGTGTTATAGTCTCTGTGTccaataattaaaaatgctCCTCAATACAAACCAGCATGGCAATTTACCATTGAGACAAAAAATCACAAGTCCATCCATGATGCATAAATACCACATGACCCATATATAACACCAATTTAAagaagttatttattatttacaggtATTATTTAACTGGCCATAGACCCCTTACCACAACAATGTTCTCTGGATTTGTAGCTACCCTGTTTTTACTTACTATTTGCTCTATACTCTGTCTACAGAACTATTTATATTGCTGCGGCTGCCTTGAGGTGGCAGACATTCAAACACTTGTTAAAAGTCTTGCAGATGGCTCTCATAATCAGACGAGTAAAAGATGAATACAGATTGGTTCACCAGCCCTGACAAACAGTGCTGCATATATTGCTGGAAAGTGACCACGCACTGCAGAGGCTCAGTGGCCTCCTTTCAAACTCATACAGGTTCAGTGGTGGTAAACATGGTTttctccatcacactcatccacTCATTTAACCTTCTGTAATCTCTGCAAAAGCGCAATGACCCATCACTTTTCTTCACTAATACTTTGGTGCAACCCAGGGGCTATGCACTCTCACAGATCATCCCACTCTCTAACATCACCATTAAGAGGCTCTTAAGCTTCTTCAAGATGTTTCTATGCTTTGGGCAAAATACATTTGGTAATCTGGTGTTGTTCTACTCCGGTATGACCAAATTCCTCACATGCACCAAAGACCATACACCACTTTCTCAAGAGAGTGGTTGTTGCTAATGTTGCAGCTATTTTTTTCAACTTCAATCACTCCAAACCCTTATGTCTATAGATTCATATCTGTGTGGAGATTTGGGTTCAAGACTTTCACAGGCACCTAGCTATTCTGCAAAGTCATGGATATACTGCATGCTTAATCCTATTCCAGTGAATGCCTGGCATTAAGAGGAATAGGAACaagcatacagtatatccatgATACAAACCTGAAAACAGCTTTCTCATGGAATAACACTTGATTATTGACCTCTCTCCAGCAATCCACAAGCACATTCATGACCAAGATGACATATTCAGGGCCCAGGCAGGAATCCTCTActtcatgtctttttttctggcAAATGTGCACCAGTCCACAAGAGTAAACATTTAACTTGTAggccatcatttttttttttttaaatgctgtgcTTCTCTGTGTACTGAACCAGCATTTCCTTCAATTTCTTCAGCGGCCCTTCTTGCCCTTCTTTTCCCCAAATCCCCCCTTTCTTTCCTCTCACAGGTTCACAAGACAATGACCAACAGGCAAACTTTGCCAGCTGGTCTATTAAGAGCTCCTCAGCAATATTTTGGATCTCTGTTCCATCAAATGGAATAAGCCTTTTGAAGAAGGCAATATCATCAGTTTTTTATGGGAGTGGAGGTTCACAAGGCAATGACCAGCAATCAGGCAAATCAGGTTGGACTGTAATGATGGCTGAATTGCAGATTTTTCCTTAAAATCAAAAAcgtatttttaaattatggcTGCTTCCTTAGTTCCAGTTTTCTAACAGGGTCAGTATCTCAAGGAACCATATGAACCATATTTCTTATTACAACCAACTAGCCAAAATGTCACATCAACCCCAAACTcgtgacataaaaacaaaattctaCAGAGGTGAACATAAAGAAACATAGACTTGTCACTCTAAATGATGACTCAGTTTAATCCGTATCCAATGTCCAGATGGACACTACTCAAGTGACGACTGCTTGGTGAGGAATCTCCTGATATTGGTCCATCTGTAAGGATGCTCACTGACACCTCACTCCTGGGCTTGGACATGTGGGCCAGAATATGGGGCAACTCACTGTGACGTTGGTTTATATGCATCACCTGGTGTGGTTGGAACAATCCACTTGGCCTGAGAGCTATTCAGCTCTGCAGAATCTGCATACACATTACAGACCTGCCACCAAATTGGTCATAGGTAGGAGGGGAAGCTTTAGGAATCGTAAAGCCAGCATGGCCAAACAAACCATTTCCATGTTCCAACACCTACAAGGGGCTCACCTGCCTTGTGCTATCTATGGTCAGGGGAGAACACCCTCAGCCTTCTGGTGGGCATCTGTGTGCACCTCTTTTACTATGTAGACAGTGTCTCGCCACTGAAGAATCTCACAAGAAGTGATGGGACACTTCATAACCAAAACTTTGCTCAATGGACAGTGACTACATTAGATCATTGTGTCCTGATGGCAATGTCATAAGGATGCAAACAACAGTTCCGCTGCTGGCCCCAAGACTTTTTAGGCATTGATGAATGTGCAAATGTACATTATGACCTATACATGTGTTTCTTTTGTATCTTATTATGACTGCTGTAGGGTGCACAATGCGCCTTGCATTGTTGGTCATTTATATGTCATCTGCCTGTCAAACACAGGACACATCATAACTGGCATGTTTTCTCTTGAAATTGCAGATCTAAGGGATTTCTATTGATGTCCTTCATTTTGACCccaaagccttcccagaatacTGAatgatattataacagcaaatggggcACTAAATCAGGAAAGGAcaaaatcacatatgggtgtggttggtcaggtgtccacatgcttttggtCATATGGTGTATCATCACTATTTAGCTACTTTTACTGTTTCACAGGTAGACTTGCCAATGCACTTTACGGTCAAGAGAACTAGAGCAAAGTCTAGTCAAGATGTCAAGACTCTGTATTTGTGTCTTCATGATTGCCTTCACAAATTAATCGTCTACTCTTTTTTTagcataatgaaaaaaaaatgagtgaaggAGTTGTGAATACTATAACCTCAAGTGTAAAATCTCTGAAGTTACCAGATTTTTCTTGGGGACAGGAGTTGTTTAGTTGTGCCTAGACCATTGcattttctgtctgaaaaacaGTGGAGGATAGAAAACAAAGACTGACAGAACAGACTGCATTGCATTTTCCCTCAGTTTCCCTTAGCTGTCAATTGCAATATGATGtagcataaaagcaagagaccaTGAGTTTACAGTTTAGAATAACATGATAATGTTTGAATGAGAAGTAGGcacagagtttctgtgcatgttctctctgtatCCATGTGGTTTCCCTCCCACTTgccaaaaacatggcagaagGTGGAGTGGCTCTGATAAATTGCACCtcgctgtgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgcatggtgcacaggataggctctggatccctGGAAACCATTGAAAGTAAGGGAGTGATTTAATAGTAGTCtaatatattgcaaatatattAAGAGGTAACATCATGACCAGGACACGAAAAGGATCCTATTCATGAAAATCATGTTAATCACATGATCACTgcaaatttcttaatttaacaatatagtTTCCACCTATATTTTTGGCTCCCAGTCTATAAAATAGCACTCGTTACAgcacctgctttttttttgcacaattaaaTGGAAGTAGCCTAATAATCTGTACTGACAGTGGCAGATTTGAAGCTTATGTGCTATGGTTATGGCTCACTTTATGCCTAGGTGGAGTTCCTAAGTTTATCTAATAATCAATATGGCATATAAAAAGAGGTCAGATCTCAAGATAAATATGGGGTCTGAGATGGTGCTGTCACCTCTGATCTCCTTCCTGTgcaccaaataaaaaaatgtggcCTCTACAGAACTGTTTCATATGATtacttaattaataataacGTATATGTAATATTGCTTCTCATCACTGGAGCTAATATCATGCAAGTAAAATGGGCATTTGTTTCTCCTGTGCAACTGCCCACGTAGGCCTGTagagacctaaaaaaaaaaaaaaaaacactttaactggGTAAAAACGGTTCACTGGGCCAGATCTGGTACTCCTTTTTTCAGTTAGATCAGTCAGGGATCTGAATAATTAGGTACAAACCTGCAGCCAGCCACAAGAACTGCCTCCATTTTGGTCTTAGGACAGGCTGCAGTCTCATCAGTTTGGTAATGCATCTACCCATTACCCAGACACCATCCAACTGCACACTTGTTACAGGGGTTTTCTTTTATGTTCAGGTGATTGATATATAGGTGATTCCTGTTCCACCAGGTTTGGATTAGTCTTGGAAAAAGCAAAAGGTTCAAAACTAATTGAGGATGTGTATGTCATGAGGGTTCACAACATATCCTGATAGTGCACTCTGCTAAATAATAATAGACAGCACTCATGGAAATAATACAGGTGGAATATAGGTCGAACAGTGTTGATACTGTTCTTTACTGGGGACGAGAATCACTCAACATGCTGATGTTGGTAtctattgaggatgagaattGCTCAAACTCACTACAGAGCAAACCGTGAGGAAGGTAGGACAGTTATGATTGTGCTTTGCAAATGTCCAAAAGTGTCTCTTGTCACAGGGATGCTCAGGGCAGACATAGCATGTGTCCTTAAGAAAACGAGGTGTCTTCACCTGTGTGAAGTCTGAGGTATGTCTGTGTAATCACGTCTTGTACCCAATGGGCTAATCTGTCTTTACACAGTGGTAGCATTCTGCTCAGTGAACACAGAAGGCCTGGGGTAAGGATGCGCATGGGCTTTTATTTATCCCATGGCCCCTTGGCATGGTCAGTGGGCAGTaacttaaacaaacaaaagtgcAGCTTTTCAAGTGGCTTCTCGCTTATCCTTCACAGAATCTAAAAAGCAGTATTTTTATGACACTCTTCCCTGAACCTAACCCAGACCCACAACCAGCTATAATGCAGCTATTGCCAGGGAACTGAAATGACCATTGGTTTAATAAAAGGATGATTTCGATGTCTAACAAATTTGGAGGTTGAAGCTGAGACAGCATGCAAAATCATTATTGCCTGtcttgttaaaagcgctatacaaattgaattgaattgataatACACAACATTGTCACCATCAGAAATTAGATGGCTCCTGAGATGGAGCTGCAGCTTTATGATGACGTTGACACAGTGCACCTTGACCAACACAGAAAGGACAGAATAGTGGgcaaaattatacaataaatctTACAATATTTTGTCTTATctagacctgtgtgtgtgtgtgtgtgcgtgcatctCTGCCACATGCAAAGGTATTTGATAATGTGGCAAATGAGATAAAATAACCCTGAGTGTTTATGAATGACCAATGACGCATGTTTTGTTGAATAATCTTaagctttttgtcttattttagtACAGAGCAATGTCAGCCActgttctttccttctttcctggcttttatttaattttgttttatttatttttttgtgacaaGTGTCAAGCCACGTCCcaattagtgtgtgttgtgctagtAAGGGAtaggtgtgagtgtgggtgATTCAAAGGGTGTGAACTGCAATGTAAGTGAGTATCATTTTACAGTGTGTTGAATGTGTAAAAAAGTATCCTACTGTCATGTTGGAGTGTGAAATTTCATATGTTGTCATGGTTATTTCTACTATAGGAGTTGCTATTTTGAAGAGTGTGAACAGCTTGTCTTATCTTAAACAGAAACTGTTTAAGATAATTGCTACTGTTGATTTTAGCATTGCTCTTGCTCtcttagggtgctttcacacttgccatttttttctcaactgCCAGCCCTTGCTTTATGTATAACCCTTGGGGAAGTGGCAGCAGTGG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_003403574.2 True 6784 lncRNA 0.41 4 12663011 12677646
Loading

Neighbor


gene id symbol gene type direction distance location
si:ch211-288g17.3 LOC108273223 coding downstream 13692 12636850 ~ 12649319 (-)
styk1a LOC108273367 coding downstream 180869 12465737 ~ 12482142 (-)
zgc:194578 LOC108273361 coding downstream 200655 12447738 ~ 12462356 (-)
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding downstream 222664 12434972 ~ 12440347 (-)
ccdc106b cc106,LOC108273335 coding downstream 235622 12420503 ~ 12427389 (-)
kmt2ba LOC108272954,LOC107701550 coding upstream 10116 12687762 ~ 12724515 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding upstream 84066 12761712 ~ 12770681 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding upstream 94275 12771921 ~ 12783866 (-)
si:ch211-81a5.8 NA coding upstream 113150 12790796 ~ 12793315 (-)
clk2a clk2,LOC108437923,LOC107724099,LOC107599513,LOC107656479,LOC107589405 coding upstream 118085 12795731 ~ 12813429 (-)
G404692 NA non-coding downstream 27798 12601632 ~ 12635213 (-)
G404687 NA non-coding downstream 71478 12589272 ~ 12591533 (-)
G404682 NA non-coding downstream 84205 12576532 ~ 12578806 (-)
G404681 NA non-coding downstream 85727 12575080 ~ 12577284 (-)
G404667 NA non-coding downstream 147801 12514471 ~ 12515210 (-)
G404719 NA non-coding upstream 8544 12686190 ~ 12686468 (-)
G404799 NA non-coding upstream 139938 12817584 ~ 12942105 (-)
G404818 NA non-coding upstream 236295 12913941 ~ 12923945 (-)
G404896 rprd2 non-coding upstream 306067 12983713 ~ 12984373 (-)
G404900 NA non-coding upstream 314555 12992201 ~ 12993258 (-)
trnav-cac_26 NA other downstream 83360 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 84210 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 85351 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 86207 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 88196 12574740 ~ 12574815 (-)
G404999 NA other upstream 463048 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 712270 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 864357 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 878510 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 1082115 13759761 ~ 13761557 (-)

Expression


LOC113535190 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC113535190 Expression in each Bioproject

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LOC113535190 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
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Co-expression Network