Item | Value |
---|---|
gene id | LOC113535190 |
gene name | NA |
gene type | non-coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047623.1 |
NCBI id | CM018569.1 |
chromosome length | 15305753 |
location | 12663011 ~ 12677646 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XR_003403574.2 | True | 6784 | lncRNA | 0.41 | 4 | 12663011 | 12677646 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
si:ch211-288g17.3 | LOC108273223 | coding | downstream | 13692 | 12636850 ~ 12649319 (-) |
styk1a | LOC108273367 | coding | downstream | 180869 | 12465737 ~ 12482142 (-) |
zgc:194578 | LOC108273361 | coding | downstream | 200655 | 12447738 ~ 12462356 (-) |
si:ch211-232m10.6 | LOC108272566,LOC108439912,LOC101076817 | coding | downstream | 222664 | 12434972 ~ 12440347 (-) |
ccdc106b | cc106,LOC108273335 | coding | downstream | 235622 | 12420503 ~ 12427389 (-) |
kmt2ba | LOC108272954,LOC107701550 | coding | upstream | 10116 | 12687762 ~ 12724515 (-) |
ndufv1 | ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 | coding | upstream | 84066 | 12761712 ~ 12770681 (-) |
hcn3 | hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 | coding | upstream | 94275 | 12771921 ~ 12783866 (-) |
si:ch211-81a5.8 | NA | coding | upstream | 113150 | 12790796 ~ 12793315 (-) |
clk2a | clk2,LOC108437923,LOC107724099,LOC107599513,LOC107656479,LOC107589405 | coding | upstream | 118085 | 12795731 ~ 12813429 (-) |
G404692 | NA | non-coding | downstream | 27798 | 12601632 ~ 12635213 (-) |
G404687 | NA | non-coding | downstream | 71478 | 12589272 ~ 12591533 (-) |
G404682 | NA | non-coding | downstream | 84205 | 12576532 ~ 12578806 (-) |
G404681 | NA | non-coding | downstream | 85727 | 12575080 ~ 12577284 (-) |
G404667 | NA | non-coding | downstream | 147801 | 12514471 ~ 12515210 (-) |
G404719 | NA | non-coding | upstream | 8544 | 12686190 ~ 12686468 (-) |
G404799 | NA | non-coding | upstream | 139938 | 12817584 ~ 12942105 (-) |
G404818 | NA | non-coding | upstream | 236295 | 12913941 ~ 12923945 (-) |
G404896 | rprd2 | non-coding | upstream | 306067 | 12983713 ~ 12984373 (-) |
G404900 | NA | non-coding | upstream | 314555 | 12992201 ~ 12993258 (-) |
trnav-cac_26 | NA | other | downstream | 83360 | 12579580 ~ 12579651 (-) |
trnav-aac_26 | NA | other | downstream | 84210 | 12578729 ~ 12578801 (-) |
trnav-cac_25 | NA | other | downstream | 85351 | 12577588 ~ 12577660 (-) |
trnav-aac_25 | NA | other | downstream | 86207 | 12576732 ~ 12576804 (-) |
trnav-aac_24 | NA | other | downstream | 88196 | 12574740 ~ 12574815 (-) |
G404999 | NA | other | upstream | 463048 | 13140694 ~ 13141115 (-) |
dpm3 | dpm3,LOC107693280,LOC107678800 | other | upstream | 712270 | 13389916 ~ 13392833 (-) |
rps27.1 | rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 | other | upstream | 864357 | 13542003 ~ 13544505 (-) |
cks1b | cks1b,LOC108433716,LOC107753514,LOC106570108 | other | upstream | 878510 | 13556156 ~ 13558631 (-) |
s100a11 | s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 | other | upstream | 1082115 | 13759761 ~ 13761557 (-) |