LOC113543895


Basic Information

Item Value
gene id LOC113543895
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4812661 ~ 4817295 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404450.2
accctagagtttacagagaatggtgcaaaaaacaaaaaacatccagtgagcagcagttctacagGCAGAAGCGCAGTGTTGATGAGACGTCTGTAAGTtggagctgacagaaaggctatggtaactcaaataaccactcgttacaaccatgGTGAAAGTGAATGGAAGGCTACAGCAGAGCTTCTGCTCTTCATAATGAAGTGAAGGGCTCTTGACATTCAGCAGATCTTttaacAAGACGGAAAAAGGAATCGTGTCGATTCTACCTGAGGGGAGGAGGGTGAACAGTTCATGGGCTGGGTGGGTGGCTGGCGGCCATCATGATGTTCGCTGCTCTGGTTCTACATCTGCTGATATAGATGTCCTCTAAAGAAGCGAGGCTGCTATTGGTCATTTTTTGAGCAGATTTAACCACTCTTTGCAGAGCCTTCTTATCAGCCACAGAGCAGTTGCTGTACCAGACAGTTGTAGAGGATGTCAGGACGCTCTCCACCACACACCGGTAAAAGGAAGTCAGCACAGCAGCACTGAGGCCGGCCTGCTTCAGCCTCCTCATAAAATACAG
>XR_004577584.1
accctagagtttacagagaatggtgcaaaaaacaaaaaacatccagtgagcagcagttctacagGCAGAAGCGCAGTGTTGATGAGACGTCTGTAAGTtggagctgacagaaaggctatggtaactcaaataaccactcgttacaaccatgGTGAAAGTGAATGGAAGGCTACAGCAGAGCTTCTGCTCTTCATAATGAAGTGAAGGGCTCTTGACATTCAGCAGATCTTttaacAAGACGGAAAAAGGAATCGTGTCGATTCTACCTGAGGGGAGGAGGGTGAACAGTTCATGGGCTGGGTGGGTGGCTGGCGGCCATCATGATGTTCGCTGCTCTGGTTCTACATCTGCTGATATAGATGTCCTCTAAAGAAGCGAGGCTGCTATTGGTCATTTTTTGAGCAGATTTAACCACTCTTTGCAGAGCCTTCTTATCAGCCACAGAGCAGTTGCTGTACCAGACAGTTGTAGAGGATGTCAGGACGCTCTCCACCACACACCGcACATGTAGGAGGACTGGGGCCGGAATCTGGACGTGAGTGTCCCTGaggtttgtgtttggatgtagGCTCCCGTGATGTCAGAAGATGACGAACAGCATTCAGCGACGAGGGTTTCCGTGGCCATCGCCATGCCAACCGTTTCTACTGTGAACGCCTACACAGTGGAGGGTTCTACCCAGAGGACCctgctctttatctctcttgTTCAcgcacagtgtgtgtgggtgtaatgTAAGGTTTCGCTCTCGGTTGTTGATTTACAGTGAgggcatttattttaataaaaggctTATTTatgcacacaaatacaaatatgggGCTTCTGGAACATTGCACTGCACGTGTGTCCATGCTGCTAGGAAGATTGTTTAAAAATCCTTAGCATTGACAAGatgctttggtataagaggaataaaacactttgagatatgctgtttataggaaaatatcaaCTTCAACTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404450.2 False 565 lncRNA 0.48 3 4813444 4817295
XR_004577584.1 True 967 lncRNA 0.46 4 4812661 4817295

Neighbor

gene id symbol gene type direction distance location
sema4ab LOC108272624 coding downstream 64823 4709738 ~ 4747838 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding downstream 106228 4694466 ~ 4706433 (-)
si:dkeyp-92c9.4 NA coding downstream 121292 4667787 ~ 4691369 (-)
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding downstream 259295 4534996 ~ 4553366 (-)
thbs3b LOC108272910 coding downstream 287254 4507481 ~ 4525407 (-)
pex11b pex11b coding upstream 19555 4836850 ~ 4839788 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding upstream 23608 4840903 ~ 4850568 (-)
syt11a LOC108272614 coding upstream 39925 4857220 ~ 4877644 (-)
si:dkey-222b8.1 si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332 coding upstream 67303 4884598 ~ 4905395 (-)
snapin snapin,LOC106569889 coding upstream 91231 4908526 ~ 4910977 (-)
G400477 NA non-coding downstream 27004 4779611 ~ 4785657 (-)
G400432 NA non-coding downstream 249297 4562211 ~ 4563364 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding downstream 250641 4558488 ~ 4562020 (-)
G400428 NA non-coding downstream 278530 4533841 ~ 4534131 (-)
G400133 NA non-coding downstream 528268 4284049 ~ 4284393 (-)
G400494 NA non-coding upstream 16459 4833754 ~ 4833983 (-)
G400503 NA non-coding upstream 64411 4881706 ~ 4884003 (-)
G400500 NA non-coding upstream 94055 4911350 ~ 4918883 (-)
G400517 LOC108273316 non-coding upstream 194892 5012187 ~ 5012795 (-)
G400501 LOC108272940 non-coding upstream 213564 5030859 ~ 5035922 (-)
polr3gla LOC108272317,LOC108415116 other downstream 177604 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 474234 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 652911 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 679739 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1578337 3224065 ~ 3234324 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 143807 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 310940 5128235 ~ 5140380 (-)
G400815 NA other upstream 770103 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1355693 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1554322 6371617 ~ 6374500 (-)

Expression


Co-expression Network