LOC113543905


Basic Information

Item Value
gene id LOC113543905
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5240099 ~ 5242052 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404451.2
GCCTGTTGTCTTTCTTGTCGCCTCTTTCGAGCTAGatatcttctgtgttttttccctaGAGCCATcgtcttgtttttgtcttttttcccctttttctctttttcattttttggccGTTTTCAGTTCCCCTGCCTAGTCTTTGTTTTTGAGATTCTTTACCTTCTTGTTTCTCCCCGTTTTGCccttgtgttatttttcttgtcttttaatAAATACTCTTGTGCACTACCTTGGCGTTTGCATCGTGAGTTTACCGCCTCCCTGTGGCTCAACGGTAAAACGTCCGACTGGGGTTCGATCCCTGGTCCTGACAGCCAGCAATGCCAGAGATAGAAAGACGTTATGAAGCGCTGAAGGTGGACAATCAGCAAGTTCTTGGACGTCTTTCAGCATGCAGTGAGATAGAAAGACTGTATGAAGCGCTGAAGGTGGACAATCAGCAAGTTCTTGAACGTCTTTCAGCATGCAATGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404451.2 True 473 lncRNA 0.44 3 5240099 5242052

Neighbor

gene id symbol gene type direction distance location
LOC113543693 LOC108273363,LOC108262220 coding downstream 8048 5229267 ~ 5232051 (-)
LOC113543887 LOC108262220 coding downstream 18842 5215000 ~ 5221257 (-)
si:dkeyp-92c9.2 LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595 coding downstream 26781 5209153 ~ 5213318 (-)
LOC117596409 NA coding downstream 87491 5151088 ~ 5152608 (-)
LOC117596451 LOC108261350,LOC108261581 coding downstream 112662 5120270 ~ 5127437 (-)
LOC113543750 NA coding upstream 9064 5251116 ~ 5257472 (-)
LOC117596412 LOC108262220 coding upstream 16503 5258555 ~ 5263273 (-)
LOC113543852 LOC108262220 coding upstream 26266 5268318 ~ 5276318 (-)
LOC113543899 NA coding upstream 39245 5281297 ~ 5285608 (-)
ptp4a3a ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245 coding upstream 47778 5289830 ~ 5317844 (-)
G400501 LOC108272940 non-coding downstream 204177 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 227304 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 321216 4911350 ~ 4918883 (-)
G400503 NA non-coding downstream 356096 4881706 ~ 4884003 (-)
G400494 NA non-coding downstream 406116 4833754 ~ 4833983 (-)
G400622 NA non-coding upstream 36851 5278903 ~ 5279314 (-)
G400676 NA non-coding upstream 129020 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 341503 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 569292 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 665095 5907147 ~ 5971174 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 99719 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 231635 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 605042 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 901672 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1080349 4150899 ~ 4159750 (-)
G400815 NA other upstream 345346 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 930936 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1129565 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 2012381 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2627351 7869403 ~ 7917693 (-)

Expression


Co-expression Network