Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117596419 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 414465 ~ 417319 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004577543.1 | True | 439 | lncRNA | 0.39 | 3 | 414465 | 417319 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113525089 | LOC108272484 | coding | downstream | 15279 | 373143 ~ 399186 (-) |
| LOC113525087 | LOC108272484 | coding | downstream | 63896 | 341071 ~ 350569 (-) |
| LOC113525084 | LOC108272484 | coding | downstream | 75116 | 328861 ~ 339349 (-) |
| plbd1 | plbd1 | coding | downstream | 104229 | 298761 ~ 310236 (-) |
| LOC117596420 | NA | coding | downstream | 127328 | 146928 ~ 287137 (-) |
| LOC113525088 | LOC108272487,LOC108272485,LOC108272486 | coding | upstream | 698 | 418017 ~ 459183 (-) |
| LOC113525090 | NA | coding | upstream | 110942 | 528261 ~ 561037 (-) |
| LOC113525082 | LOC108272487,LOC108272486 | coding | upstream | 154382 | 571701 ~ 588652 (-) |
| LOC113547081 | NA | coding | upstream | 226729 | 644048 ~ 645951 (-) |
| LOC117595703 | LOC108272505,LOC108272504 | coding | upstream | 235179 | 652498 ~ 661063 (-) |
| trnar-ccu_18 | NA | non-coding | downstream | 103810 | 310583 ~ 310655 (-) |
| G398158 | NA | non-coding | downstream | 107056 | 307118 ~ 307409 (-) |
| LOC117596423 | NA | non-coding | downstream | 108592 | 305073 ~ 305873 (-) |
| G398140 | NA | non-coding | downstream | 221332 | 169832 ~ 193133 (-) |
| G398135 | LOC107387363 | non-coding | downstream | 306690 | 107329 ~ 107775 (-) |
| G398304 | NA | non-coding | upstream | 177799 | 595118 ~ 595989 (-) |
| G398338 | NA | non-coding | upstream | 225083 | 642402 ~ 644009 (-) |
| G398393 | NA | non-coding | upstream | 424617 | 841936 ~ 846790 (-) |
| G398394 | NA | non-coding | upstream | 430426 | 847745 ~ 848753 (-) |
| G398395 | NA | non-coding | upstream | 433131 | 850450 ~ 851339 (-) |
| pick1 | pick1 | other | downstream | 88920 | 312408 ~ 325545 (-) |
| LOC117596396 | NA | other | upstream | 56431 | 473750 ~ 482008 (-) |
| LOC117596444 | smdt1 | other | upstream | 322924 | 740243 ~ 890302 (-) |
| fam234b | fam234b | other | upstream | 474601 | 891920 ~ 906375 (-) |
| LOC117596481 | NA | other | upstream | 490306 | 907625 ~ 907779 (-) |
| LOC117596482 | NA | other | upstream | 492750 | 910069 ~ 910223 (-) |
