LOC117596423


Basic Information

Item Value
gene id LOC117596423
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 305073 ~ 305873 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577546.1
ATAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTTCCCCCTTACAGAGGTACACGCTCCGTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGC
>XR_004577547.1
ATAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTTCCCCCTTACAGAGGTACACGCTCCGTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCGTACATAGAACCGCTCCCC
>XR_004577548.1
ATAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTTCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCGTACATAGAACCGCTCCCC

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577546.1 False 250 lncRNA 0.59 3 305279 305873
XR_004577547.1 True 295 lncRNA 0.59 4 305073 305873
XR_004577548.1 False 215 lncRNA 0.59 3 305073 305873

Neighbor

gene id symbol gene type direction distance location
LOC117596420 NA coding downstream 17936 146928 ~ 287137 (-)
LOC117596421 NA coding downstream 188306 79388 ~ 116767 (-)
LOC113525084 LOC108272484 coding upstream 22988 328861 ~ 339349 (-)
LOC113525087 LOC108272484 coding upstream 35198 341071 ~ 350569 (-)
LOC113525089 LOC108272484 coding upstream 67270 373143 ~ 399186 (-)
LOC113525088 LOC108272487,LOC108272485,LOC108272486 coding upstream 112144 418017 ~ 459183 (-)
LOC113525090 NA coding upstream 222388 528261 ~ 561037 (-)
G398140 NA non-coding downstream 111940 169832 ~ 193133 (-)
G398135 LOC107387363 non-coding downstream 197298 107329 ~ 107775 (-)
G398158 NA non-coding upstream 1245 307118 ~ 307409 (-)
trnar-ccu_18 NA non-coding upstream 4710 310583 ~ 310655 (-)
LOC117596419 NA non-coding upstream 108592 414465 ~ 417319 (-)
G398304 NA non-coding upstream 289245 595118 ~ 595989 (-)
G398338 NA non-coding upstream 336529 642402 ~ 644009 (-)
pick1 pick1 other upstream 6535 312408 ~ 325545 (-)
LOC117596396 NA other upstream 167877 473750 ~ 482008 (-)
LOC117596444 smdt1 other upstream 434370 740243 ~ 890302 (-)
fam234b fam234b other upstream 586047 891920 ~ 906375 (-)
LOC117596481 NA other upstream 601752 907625 ~ 907779 (-)

Expression


Co-expression Network