LOC117596429


Basic Information

Item Value
gene id LOC117596429
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14183486 ~ 14191755 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577551.1
CGAGGACACCGTGCCGCCCGTGCGCAGTGCAAATCAGACTGTGGCGAGGATTTGACAGCCGTGTAGTTGGGGAATAAGTGTGAAGACCATCAGCAGTTCATCAAAAAATCTAagCATATTTTGAGTCTGTTGTTGATCATGGGAAGCAGAGTTGTGGAAACCTAGCAGGTAAACAAGCATCTGAAATACTTCCAACTCCTGGAGAGCTGCTGTATCTTCTGATCGGTTTTGGAGTCCTTGTGCCCCTCTGTGCACCTGCTTGCTCTACCATTCTCCTTTCTAGATTCTAATTTGGCATTTCTGGAATTTGGAATTTCACCTTTATTAGTTTGTAGTTAGTGTTAGTCCTGTCtcaataaaatgtacaacacaATAGTAAATAGACGTACTTCAGAGCACTTCAACCATGTCATTGAGATATTTTGACATCCACAAATCCAAGTGCAGCCACACACTGATTGTTGTACAGTCTAGAAACCTGTTGCTTTTTTGCAATTTATGGTAATACATACACAATAAGTAATAAGGTTACTAAGGTTGTCGGTTTTATCTCTTGTGTTTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577551.1 True 564 lncRNA 0.41 3 14183486 14191755

Neighbor

gene id symbol gene type direction distance location
mpp6b mpp6,LOC108272353,LOC107592011 coding downstream 14890 14139944 ~ 14168596 (-)
ccdc126 ccdc126 coding downstream 109311 14067317 ~ 14074175 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding downstream 137443 14016688 ~ 14046043 (-)
oxnad1 oxnad1 coding downstream 182821 13925835 ~ 14000665 (-)
LOC113535216 LOC108272677,LOC108433755,LOC107727734,LOC103040142,LOC107754022,LOC107549876,LOC107563022,LOC107666341,LOC107665170 coding downstream 378898 13782962 ~ 13804588 (-)
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding upstream 4200 14195955 ~ 14218170 (-)
arid1ab LOC108272722,LOC108415569 coding upstream 129110 14320865 ~ 14388466 (-)
nudc nudc,LOC107689540,LOC107700719 coding upstream 249045 14440800 ~ 14452371 (-)
kdf1b LOC108273298 coding upstream 268637 14460392 ~ 14470818 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding upstream 290182 14481937 ~ 14491263 (-)
G405575 NA non-coding downstream 106336 14076442 ~ 14077150 (-)
G405420 NA non-coding downstream 311058 13815898 ~ 13872428 (-)
G405419 NA non-coding downstream 368594 13808483 ~ 13814892 (-)
G405386 NA non-coding downstream 447738 13735536 ~ 13735748 (-)
G405368 NA non-coding downstream 476944 13655405 ~ 13706542 (-)
G405681 NA non-coding upstream 64769 14256524 ~ 14329200 (-)
G405701 NA non-coding upstream 121984 14313739 ~ 14314834 (-)
G405707 NA non-coding upstream 187137 14378892 ~ 14385650 (-)
G405900 NA non-coding upstream 426894 14618649 ~ 14686310 (-)
G405901 NA non-coding upstream 427583 14619338 ~ 14654751 (-)
G405588 NA other downstream 63828 14114619 ~ 14119658 (-)
npy npy other downstream 99640 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 421929 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 624855 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 638981 13542003 ~ 13544505 (-)
tpbga LOC108272337 other upstream 283721 14475476 ~ 14479077 (-)
G405961 NA other upstream 775721 14967476 ~ 15013988 (-)

Expression


Co-expression Network