LOC117596450


Basic Information

Item Value
gene id LOC117596450
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3514812 ~ 3516233 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577577.1
AGCCACAGAGGATAAAAAAGAGTGTTGAGAGAGCTtcaaagaaaagtaaagaattTCTCAAAAGTAGGGTTCTTCAAAGACCACATCAAACAAAAGGAGCCGAGAAGGAGGGTGATGGGAAaaAGTGTACTTGAACTCACCAGCCAGACTCAGAGGGAGGGCTCgcagcccacacacacagacacacatcttCCCTGCCAAATGCCACGGTGATTTCCAGTAATCCTGCCCACTGGTGAAGTGTTCAGCTGAAGACTTTTGACCCACATGACCTCATTACTGTGCAGCTGGAAATCttctcagtctttctctcagtctATCGGTCGATCTGTCCTTCCTTTGGACCCGCTGTGATCCTGGttccttcctgtctgtctgcctcaagctgtctcactctcttatttGGTCGCCggctctgtttctgtctctctcactctgtgtctgGATGACAGCACTTGGGAAGCCCCAACTTCCTGACCTCTGCTTGTGCTTCCTGGCTTCCAGACATTCTTTCTCTATCTccgtctctccgtctctctctctctctgcctgtctgtctctctacctatAGTTACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577577.1 True 577 lncRNA 0.49 3 3514812 3516233

Neighbor

gene id symbol gene type direction distance location
junbb LOC108272820 coding downstream 24645 3488273 ~ 3490167 (-)
mast1b mast1,LOC107567212 coding downstream 50011 3433728 ~ 3464801 (-)
atg4db LOC108272831 coding downstream 87285 3419380 ~ 3427527 (-)
evplb LOC108272806 coding downstream 111282 3382114 ~ 3403530 (-)
trnae-cuc_42 NA coding downstream 203380 3311361 ~ 3311432 (-)
ubn2b LOC108272810 coding upstream 69041 3585274 ~ 3600490 (-)
LOC113534607 LOC108272840 coding upstream 231249 3747482 ~ 3754120 (-)
si:ch211-106h11.3 LOC108272832,LOC108439110 coding upstream 278626 3794859 ~ 3809349 (-)
LOC113534792 LOC108272837 coding upstream 306513 3822746 ~ 3825504 (-)
rangap1a rangap1,LOC107745514 coding upstream 411020 3927253 ~ 3937638 (-)
G399629 NA non-coding downstream 83530 3414965 ~ 3431282 (-)
LOC113534314 NA non-coding downstream 151201 3360671 ~ 3363611 (-)
LOC113534843 NA non-coding downstream 152986 3361748 ~ 3361826 (-)
LOC113534841 NA non-coding downstream 153858 3360882 ~ 3360954 (-)
G399543 NA non-coding downstream 239970 3273556 ~ 3274842 (-)
G399727 NA non-coding upstream 44915 3561148 ~ 3562361 (-)
G399738 NA non-coding upstream 68668 3584901 ~ 3585214 (-)
G399742 NA non-coding upstream 84813 3601046 ~ 3635560 (-)
G399783 NA non-coding upstream 212706 3728939 ~ 3729385 (-)
G399804 LOC108272816 non-coding upstream 257100 3773333 ~ 3773628 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 219539 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 280488 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 318249 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 550655 2961713 ~ 2964157 (-)
G399028 NA other downstream 1088206 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 604164 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 634666 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 778983 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 1081567 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1444869 4961102 ~ 5008464 (-)

Expression


Co-expression Network