LOC117596467


Basic Information

Item Value
gene id LOC117596467
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1875199 ~ 1876420 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577585.1
CTAGAAGAGAAATAACAGCATACAGAAGGAGGTAACATTTCACACTTTAATTAGAGGTCTGTCTTTAAGAAACGCTGTGACAAGATTAAGATGACCCAGCTTTCTTCATCTGAAGTTGTGCTGAAGAACATAGCTGAGGCTGTTATTGttccattaaatatatatacatttataatggcATTCATAAAAgcagataaataaaacagtaaagcaAGGCACATCAATAAATTTGTGCTTTGTGTGAGCTCAattcacaattatttaaaaaaaaaaatcctatatttCTTCATCTTTCTTATGCAActcatttaacatattttttgaaAAGACATTAGCAgatgttttctatttttatgcACAGCACTCACTGAATTGTATATGTGATAGTGCTCTTAGTGGTagatagcacacacacacacacacacacacacacattgctgagtttggtgaaaaacagtagGAAATTCAGTCTGTAATGTTCTGAGAGGAGGATAGAGAATGGACATTTTGgttatatttctttttacatttatgtttggAGCcttcacacacagagacaattCACGAACTCATTGTCTCTTTTTTGCATTCCTAACTGTATAAAAAGGAGTAAATGTGTACAGTCAGTAAAATCTTAAAACATTGTTCAGAACAGTGTCTC

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005516 calmodulin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577585.1 True 661 lncRNA 0.33 3 1875199 1876420

Neighbor

gene id symbol gene type direction distance location
LOC113524042 NA coding downstream 162 1872919 ~ 1875037 (-)
LOC113524043 NA coding downstream 14242 1858882 ~ 1860957 (-)
LOC117596466 NA coding downstream 51430 1821683 ~ 1823769 (-)
LOC117596405 NA coding downstream 65346 1808522 ~ 1809853 (-)
LOC113524064 NA coding downstream 106450 1766704 ~ 1768749 (-)
LOC113524085 NA coding upstream 39870 1916290 ~ 1932126 (-)
hspbp1 hspbp1,LOC107550267 coding upstream 58086 1934506 ~ 1951096 (-)
LOC117596454 LOC108273013 coding upstream 86310 1962730 ~ 1970432 (-)
jmjd8 jmjd8 coding upstream 102838 1979258 ~ 1982556 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding upstream 127202 2003622 ~ 2007277 (-)
G398751 NA non-coding downstream 148671 1726120 ~ 1726528 (-)
G398743 mpst,zgc:162544,LOC108273010,LOC105890773 non-coding downstream 158736 1715036 ~ 1716463 (-)
G398732 NA non-coding downstream 183283 1691472 ~ 1691916 (-)
G398730 NA non-coding downstream 195517 1677188 ~ 1679682 (-)
G398718 NA non-coding downstream 209708 1647700 ~ 1665491 (-)
G398922 NA non-coding upstream 75501 1951921 ~ 1952184 (-)
G398925 NA non-coding upstream 79626 1956046 ~ 1959562 (-)
G398942 NA non-coding upstream 121666 1998086 ~ 1998681 (-)
G398935 NA non-coding upstream 154748 2031168 ~ 2032632 (-)
G398953 NA non-coding upstream 163881 2040301 ~ 2040923 (-)
st13 st13,f10a1 other downstream 283465 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 358885 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 413129 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 557563 1276278 ~ 1317636 (-)
fmc1 fmc1 other downstream 920999 951202 ~ 954200 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 478489 2354909 ~ 2377631 (-)
G399028 NA other upstream 495876 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 1085293 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 1140870 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 1270879 3147299 ~ 3196563 (-)

Expression


Co-expression Network