LOC117596478


Basic Information

Item Value
gene id LOC117596478
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11120569 ~ 11131188 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577592.1
TAGTTATATTAGTAGGGATCCAGCTAACTACAAGACCAAATCAAGAACAATTTGTGGTATTGCAAGGAAAAAACACTTAACCATGCTAGCAGTATCAATAGAATAGCAGGGGATGTGGAATACTCTAAGCAAATATCACCAAGTGAGAACCCAAACCAGTTTGTGACTGGAGGGAAACCAGCTGTGTGTTAGCGGAAACCAGCTAACTTAGCCAGCAACCACGAGCTAACTATAAGCTTGTGGTGTGGCAAGGGAAACCACTTAACCATGCTAGCAACACATAGTTTGGATTCATTGGCCTTTGGCttgagacttttattttgacatttgcCCCAGGTCACCTGATGAGTTAATATGGTGTCTTCCATATGCTCGGATAAACTTTTTTAGTTAGAAATTGGAACATGCTGGTGACCAAATAGTTTTGTACCGCTTCTAACAATCTTTACATTGGGAatccctttttttattttttttggaattttgatCCGAATTTTGATTTTGAGcaatttgattttgattttgtgtgtATCGCCTGCCTGCATACCTGCCTGCATACCTGCCTGCCTACTCTTTGCCTGCTTGACTGCCTACCCCTTTGTCTGCCtgcttgtttgcttgcttgctcGCCTACCTGCCAACTTGCCTCTCTCACACCATCACTGAACACAGggtcatggtggatccagagtctatcccagcaACACTACACATGAGGACTTCTGAGTTCTCTGAAAACATCTGGGCCAGTGGAACGTCCCTCTCCCCTCTGCTTCCTGCTCTGCGGTGGCGCTATGTCTTACagacacaacacaaacaaagcTGACTCCTACACTCCCAACCGATGTGtggatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgagacacatgCCCCTGTAGGCTTAATGCAGTAGAGCACTGTGACCGATAATGCTGcactttctgtttattaaccttgtgaaagaaaagtgtatgtaagtgtacttttaaaaagtataattaACATAAGTACATGCTTTTAATGTTGCCACTTTATACGCACTTTATTACAtactaaatgtattatttgGAACAAC

Function

GO:

id name namespace
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577592.1 True 1077 lncRNA 0.42 3 11120569 11131188

Neighbor

gene id symbol gene type direction distance location
stmn1a stmn1,LOC108415666,LOC101477131,LOC102781761,LOC100709328 coding downstream 123573 10991712 ~ 10996996 (-)
cited4a LOC108273161 coding downstream 704851 10412385 ~ 10415718 (-)
si:ch211-30b16.2 si:ch211-30b16.2,LOC108273305,LOC108441689,LOC107569868,LOC107686956,LOC107719841,LOC107708724,LOC107693995 coding downstream 905688 10203813 ~ 10214881 (-)
LOC113543865 LOC108272957,LOC101471788,LOC102229941,LOC105937694 coding downstream 937803 10121543 ~ 10182766 (-)
ube2e1 ube2e1,LOC108272959,LOC105903698,LOC107743927,LOC107655879,LOC107565235 coding downstream 1006636 10096124 ~ 10113933 (-)
LOC113543771 oprd1a,LOC108272459,LOC108411271,LOC105903674,LOC107689567,LOC107732912,LOC107595906,LOC107688080 coding upstream 112317 11243505 ~ 11274312 (-)
LOC113543744 fam46bb,LOC108273300,LOC108413340,LOC105903734,LOC107712594,LOC107700817,LOC107737782 coding upstream 253005 11384193 ~ 11397339 (-)
LOC113543901 LOC108273294,LOC108413341,LOC107550656,LOC107737765,LOC107700701 coding upstream 287965 11419153 ~ 11430318 (-)
trnaa-ugc_19 NA coding upstream 309476 11440664 ~ 11440735 (-)
trnap-ugg_24 NA coding upstream 310327 11441515 ~ 11441586 (-)
LOC117596414 pkib,LOC108249014 non-coding downstream 98941 11007620 ~ 11021628 (-)
LOC113543816 NA non-coding downstream 613519 10502311 ~ 10507050 (-)
LOC113543918 NA non-coding downstream 615384 10505048 ~ 10505185 (-)
LOC113543919 NA non-coding downstream 616244 10504188 ~ 10504325 (-)
LOC113543917 NA non-coding downstream 616695 10503793 ~ 10503874 (-)
G403715 NA non-coding upstream 7594 11138782 ~ 11139126 (-)
G403717 LOC107675819,LOC107719741,LOC107739129,LOC107589765 non-coding upstream 19619 11150807 ~ 11151179 (-)
G403823 NA non-coding upstream 80698 11211886 ~ 11213838 (-)
LOC117596438 NA non-coding upstream 125603 11256791 ~ 11260391 (-)
LOC117596437 NA non-coding upstream 196510 11327698 ~ 11362956 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 1704316 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 1836076 9227395 ~ 9284493 (-)
G402673 NA other downstream 1959099 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 3202876 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 3843787 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 646181 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 1014410 12145598 ~ 12256372 (-)
G404644 NA other upstream 1299807 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 1384128 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 1439276 12570464 ~ 12570536 (-)

Expression


Co-expression Network