XLOC_000582


Basic Information

Item Value
gene id XLOC_000582
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 46247618 ~ 46248591 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002869
tttctatttgtgttttctactatggaagtcaataaatacaagtttccagctttcctcaaagtatcttttgtgttcaatagaagaatctcataaaggtttggagggTGAATACTGTAAAtgctgagtaaattttcatttttgggtgaactacccccttTAATTGTCTGTTAATTGTCTGCACCGTCTTTctccaacacacaaacacacacgcacacacacacacactcagcgtcAGACAGTCATGTGGGATGTTCAAGGAGCTGTGAGTGCTATCCTGTTTACACTCTCTGGGAGGGGACCCCGAGCACCTGTTTTGTCTTGCGGGGCAGCCACCGCGAAGTCATCCACAAAAGAGAGACGAACATCTGCTGGAGGTTGTCCGATGTTGCCAACAGCACCATGCAGGCCAGGTGCAGATTTTACTGAGAGAGAGCTCATTTTAGGGGAAAGAGGCACACGGCGGCGCCCTCTCAGGGCAAACATCCCTGCTCTGTCACCTGGTTCTTTGTGCCGCAGCAGCTGAGCGTGCAGGATCCACAGCTGCTTCCAGCTCCAGTCCCCGTCTTCTGTTTGTTTTCCCTCCAAAACCACTCACCTGCTTTAAGTTGCTCACCTCAGGGCCTGTTCGTAACGGAAACCATCATTTGATCAGTAAACATCTCTTCTGCTCACCATATGCTGCATGACAACATCAGCAAATACATTCTAGCCGTGGAAAATGTTAATTGATATTAATTAGCTTTATGAAGACGTTAAAAATCATCTTTTTAAGATCTTTGAGCATcctaatttgtttatatatttttttttattttctacgtTGAATccatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002869 True 831 lncRNA 0.44 2 46247618 46248591

Neighbor

gene id symbol gene type direction distance location
XLOC_000581 NA coding upstream 28457 46217503 ~ 46219161 (+)
XLOC_000580 sox1b coding upstream 51511 46194333 ~ 46196107 (+)
XLOC_000579 NA coding upstream 94418 46032720 ~ 46153200 (+)
XLOC_000578 si:ch211-138g9.2 coding upstream 217041 46026457 ~ 46030577 (+)
XLOC_000577 eif5b coding upstream 226893 45925150 ~ 46020725 (+)
XLOC_000583 NA coding downstream 1388 46249979 ~ 46251824 (+)
XLOC_000584 NA coding downstream 14860 46263451 ~ 46272326 (+)
XLOC_000585 NA coding downstream 58424 46307015 ~ 46307550 (+)
XLOC_000586 BX465849.1 coding downstream 152021 46400612 ~ 46401636 (+)
XLOC_000587 tubgcp3 coding downstream 156377 46404968 ~ 46452686 (+)
XLOC_000575 NA non-coding upstream 378121 45867040 ~ 45869497 (+)
XLOC_000573 BX511120.1 non-coding upstream 479088 45768416 ~ 45768530 (+)
XLOC_000568 NA non-coding upstream 599372 45644766 ~ 45648246 (+)
XLOC_000591 NA non-coding downstream 470505 46719096 ~ 46726957 (+)

Expression


Co-expression Network