XLOC_000589 (cab39l)


Basic Information

Item Value
gene id XLOC_000589
gene name cab39l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 46598502 ~ 46617283 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001020
GCTGTTGGTGACTCACAGTTTCAGTGTtcgcgacacacacacacacacacacacactgcccgcACACGCAGACTTTGACTGCGACACTGTCGTTCAATAGTTCAGCAGGTGTATGACGCGATACTCCAAAACGTCGTGATTCAAAACCATGAGTCATGCGCTTTATTTTTCGCCAGTATCTCTCCATAATAACACagtctgaacacatccacatccGGGTAACGCGCCTCGCTGAGGGAGGAAACCGCGCGCCATCTGACCTGAGATCAGCTCGCAGATTTTACACCAAAGCACAGCAAACCGACACACGGCCGATCCCAGATCATTGGCAAGCCACTCGAGAGGACGTTGGTTACAAATCACCCATCATGTCTTTTGCAGATATTCGCGTTTGAGTCAGTCAGTGTTAAATTCGCTCATACACACATTCCGCTGACGTTTAGCCCagagcgcgcgcacacacacacagaagagagAAGAGTCTGCTGGCGTGATCAGGAGGACTGTCGcttgctaacacacacacatatacaaaacaCCACAGCAGCCGCAGAAGAGGACACGATTACATCGCAGTGGCCTGCATTTCAGCACGAACTCGCACCATATATCAGTCTGACAGATGCTGACAACTCTCTCTGCTTTCCTTGAAACACACTGAGgTTGTGAAGAAAGAAGTCTACGGCCGCTACCATGCCACTCTTTGGTAAATCTCACAAAAGTCCCACAGAAATTGTGAAGACTTTGAAGGACAACCTCTCCATCCTGGTCAAGCAGGACAAGAAGACAGAGAAGgctTCAGAAGAGGTGTCGAAGTGTCTGGTGGCAATGAAGGAGATCCTGTACGGCACCAATGATAAGGAGCCGCACACAGAAACCGTGGCTCAGCTGGCCCAGGAGCTCTACAACAGCAGTCTGCTCATCTCACTAGTGGAGAACCTGCAGGTCATCGACTTTGAGggtaaGAAGGATGTCTGTCAGATCTTCAACAACATCTTGCGTCGTCAGATCGGGACCCGCAGCCCGACAGTGGAGTATTTCTGCTCCCATCAGGAAGTGCTCTTCATCTTACTCAAAGGGTATGAGACTCCTCAGGTGGCGTTGAATTGTGGGATTATGCTGCGCGAGTGTATCCGGCATGAGCCTCTCGCCAAAATCGTCCTCCATTCTGAACACTTCAAAGATTTCTTCAGCTATGTGGAGATGTCCACATTCGACATCGCATCTGACGCATTTGC
>TCONS_00001021
GAGATCAGCTCGCAGATTTTACACCAAAGCACAGCAAACCGACACACGGCCGATCCCAGATCATTGGCAAGCCACTCGAGAGGACGTTGGTTACAAATCACCCATCATGTCTTTTGCAGATATTCGCGTTTGAGTCAGTCAGTGTTAAATTCGCTCATACACACATTCCGCTGACGTTTAGCCCagagcgcgcgcacacacacacagaagagagAAGAGTCTGCTGGCGTGATCAGGAGGACTGTCGcttgctaacacacacacatatacaaaacaCCACAGCAGCCGCAGAAGAGGACACGATTACATCGCAGTgTTGTGAAGAAAGAAGTCTACGGCCGCTACCATGCCACTCTTTGGTAAATCTCACAAAAGTCCCACAGAAATTGTGAAGACTTTGAAGGACAACCTCTCCATCCTGGTCAAGCAGGACAAGAAGACAGAGAAGgctTCAGAAGAGGTGTCGAAGTGTCTGGTGGCAATGAAGGAGATCCTGTACGGCACCAATGATAAGGAGCCGCACACAGAAACCGTGGCTCAGCTGGCCCAGGAGCTCTACAACAGCAGTCTGCTCATCTCACTAGTGGAGAACCTGCAGGTCATCGACTTTGAGggtaaGAAGGATGTCTGTCAGATCTTCAACAACATCTTGCGTCGTCAGATCGGGACCCGCAGCCCGACAGTGGAGTATTTCTGCTCCCATCAGGAAGTGCTCTTCATCTTACTCAAAGGGTATGAGACTCCTCAGGTGGCGTTGAATTGTGGGATTATGCTGCGCGAGTGTATCCGGCATGAGCCTCTCGCCAAAATCGTCCTCCATTCTGAACACTTCAAAGATTTCTTCAGCTATGTGGAGATGTCCACATTCGACATCGCATCTGACGCATTTGCCACTTTTAAGGACCTGCTTACGAGACACAAGGCTCTGGTGGCTGAGTTTTTAGAACAGAACTATGATGCGGTTTTCGATAACTATGAGAAACTGCTTCACTCCGAGAACTACGTGACCAAGAGACAGTCGCTGAAgCTGCTGGGTGAGCTGCTCCTTGACAGACACAACTTCACGGTCATGACGCGGTACATCAGTAAACCAGAGAACCTGAAGCTCATGATGAACCTGCTGAGAGACAAGAGTCCCAACATCCAGTTTGAGGCCTTCCACGTCTTCAAGGTGTTCGTGGCCAATCCAAATAAAACGCAGCCCATCGTAGACATTCTGTTGAAGAACCAAACCAAACTCATCGACTTCCTTAGCAACTTTCAGAAGGATCGCACAGACGACGAGCAGTTCAACGATGAGAAGACATACCTGGTCAAACAAATACGAGACCTAAAGAAACCGGCCTCCTAAACTCTAGCTACTTCAGTAttaggaaaacaaacaaaacacacacacacacacaaaaaattatattaacaataataattctatTTAAAATCTCGACAGATTTGTCTTTTCTTAGTTCTGAGGCTTACAAATTCCTCATCGTTGACGTTCTCCGTTTCTTATTTTGCGTTTCCCCCTATCGTGATTTTGATTTAATCGCGAACGTTTTTGTGCCATGAATAGGATGTTTTAAAAGTAGGAATCAGCCAGTTTGAATTGCAGGAAGAATCGACTTCGAGATTCGTCTCTCTGCGGATGAGGAAGTACAGGTAAACTTTCACTCCTCCGTTTCTGGATGTTTCTTTCTCGGTTCCTGGAGACTCGACGTGACTGAAAGTTTGCGTTTAATTGCTGGAGAAGATGAAGAGCTGTTGATTTCCTCTCTGTAACTGCACTAATCCTGCTTTGTCCAGCTCTTATTTCCACGACACTACCAACCTGATCATTTCCTCTCTGTTCTGTTTGTGTTTCATTTAAGAAGGAAGAATTCATTTATCAGTATTTTAATGATGGTTTATCTGAAGCAGGAAGAGCGTCTGTGGGTCTTTGTGTACAAATTTTCCTCTCGTTTTCTTATTACtattcttattttatatatttttacttcagtttttttttttaaacacgctGATTTTACTCTTTAAGGTGGTTGCCATTTTTATTTCGAAAGAAGAAGAATCTTGAAAAATCAACTTTGGCACTAAGTGAACCGGTGTAAATTCCAGCTCTAGATTTCAATGTAGATCAATGAGGGTTTTCTCCTGTAGCGCTTTGGTTTTACTATAGTATCCTCAGCGCTATAGTATCTTAACTTTAGTGCGTCAGACTGAAGTACTTCTTTATACTGTAGTGCAGCTGTAGTGTTATACTATAGTATTTCATTTTACTGTAGTATGTATTTTGTGCTATAACCCATAATTCAGCTGTCTTTGATGAATTGGACAGAAGTAGATTGTTGCATAGCTGAAAATCAGATGAAATGAGGACGCAAATGTATAAAACAGGTGcctttttgttctttttattattattattattattattatttgagatTAAATATTGGAAGGGGGAGCttaatttctttttattgttttaaatatgttcTGATTGGGCATATTTCGCTTGATTAAGCAATGAACCTCTTTAACTCACTATATTGGAGTTATGCTGTTGAAGAAAATTCATTAAATTTGATTCTGTTTTTCCTCTTTGGTTGATcgattcagtttatttttatgacGTGTTTTGTTTGGGATGAAATATGCTTTGAGGTTTGGATCTGTCGCCCGTAAAGAGAAGAAAAACCCATTTCTGTTCTCTTAAGGCAACTGTTTTCAACTCTTAAATCCGTCTGAGCCACATTTATTGAATATTTGTCAGCCTTTACATTGAAAATGCCAAACCGTGTGTTCACAATATGAAGTCAAAATCTTTCCTACTACAAACACCGGTGCGGTTTTCATCTGAAATGCTAAAAGTACCGTATCAATAAAGATCAAGTGAAGCATTAGCAGCATCATTGActcattttttccccccaaaaaaatgcAATAGTGCAAATTTGTGCTATGTAAATTAAATTCtccattttcaataaatatatttcacacgAGCACATGATGAAA

Function

symbol description
cab39l Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in intracellular signal transduction. Orthologous to human CAB39L (calcium binding protein 39 like).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005575 cellular_component cellular_component
GO:0043539 protein serine/threonine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-204 Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in intracellular signal transduction. Orthologous to human CAB39L (calcium binding protein 39 like).

Ensembl:

ensembl_id ENSDARG00000036658

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001020 False 1238 mRNA 0.50 6 46598502 46612049
TCONS_00001021 True 3012 mRNA 0.41 9 46598764 46617283

Neighbor

gene id symbol gene type direction distance location
XLOC_000588 mcf2la coding upstream 4214 46493944 ~ 46594288 (+)
XLOC_000587 tubgcp3 coding upstream 145816 46404968 ~ 46452686 (+)
XLOC_000586 BX465849.1 coding upstream 196866 46400612 ~ 46401636 (+)
XLOC_000585 NA coding upstream 290952 46307015 ~ 46307550 (+)
XLOC_000584 NA coding upstream 326176 46263451 ~ 46272326 (+)
XLOC_000590 arl11 coding downstream 35332 46652615 ~ 46654528 (+)
XLOC_000591 NA coding downstream 101813 46719096 ~ 46726957 (+)
XLOC_000592 NA coding downstream 118445 46735728 ~ 46736116 (+)
XLOC_000593 CU986305.1 coding downstream 210608 46827891 ~ 46845676 (+)
XLOC_000594 tmprss3b coding downstream 330727 46948010 ~ 46957351 (+)
XLOC_000583 NA non-coding upstream 346678 46249979 ~ 46251824 (+)
XLOC_000582 NA non-coding upstream 349911 46247618 ~ 46248591 (+)
XLOC_000595 NA non-coding downstream 342619 46959902 ~ 46964228 (+)
XLOC_000597 NA non-coding downstream 535907 47153190 ~ 47155997 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000119_01800069_01805163 CAB39L, CAB39L.L coding CI01000119 null 1800039 ~ 1805636 (-)
bowfin (Amia calva) AMCG00009263 cab39 coding CM030126.1 CM030126.1 30906868 ~ 30917622 (-)