AMCG00000025


Basic Information

Item Value
gene id AMCG00000025
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 55439 ~ 104362 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000025
CTCTCAGACAGTAGCAGTGTTCAGCAGTCTCCTCCGTTACTGTTTAAGATAGCTGGTCAATCTGCTGAACTCAACTGCAGGCACACGTTCAGCAGCTATACTACAATGCTGTGGTACCAGCAAACAGGAGCGAAACAAGTTTTGAAACTGATTGGATACCTTTATTTAAAGTCTCCAAACCTTGAAGACCTTAATGGGAAACAGTTCAGCCTTAGAGGAGATGCTCAAAAGGAAGGATCCTTACACATCTCTAACTTAACAGTAGAAGACAgttctgtgtatttctgtacagtCAGTCAACACAGTGCTGCAGATTTCCTCTCTTCCTGTACAAAATCCCTCCTTTTAACTATCCAGCAGTCCCCTCCTGACTATTTTGAGAAGCTTGGACAATCTTGTTCCCTTCACTGTCTGAATCCCGACAGCACCTATGCACGTATGCTCTGGTACCAGCAAAAGGGCAGAAGAGGGGCTTTGAAACTGATTGGACTCCTTTACAGAGAGAGTCTCACCACTGGAGAGGAACAATTCACCGACAGGTTCAGGATATCTGGGGATGCAACCAACAATGTGACTTTAGAGATCTCCAGCCTAATATTTGCAGACAGCgctgtgtatttctgtgctgtCAGCCAACACAGTGCTACAGATTCTCTCTTCCCTATACAAAAACCCTTCCCAAACCACAACTTCAACAATACTTCTGTCAGCCTCAAAGTCCAGCAGTCTCTTGCTCTATATAAGACTCCTGGAGAAGCTGTTCAACTCAACTGCTCTCATGACGACAGTAACTTTGACAAAATCTACTGGTACCAACAATTTCATGGTCAAGGAGCTCTTGAATTTATAGGATTTCTTAATTACAGATCACCAActgttgaaaacaaagcaaagttcAACATTACTGGGGATGCTGAGAAGGAGGGCTTTTTACAAATCTATGATCTAAATGGTGTCAAGATGGTCAGAGTTCTCATTGGATTAACTGTGTTATTGCACTGGTTGACAAGTCCATCAGACAGCAGTGGTGTTCAGCAGTCTCCTCTTGCCCTCTTTAAGAATGCTAATGAATTTGCAGAACTGAAGTGCAGCCACAATATCAAACGCTATGATACCATCCTCTGGTATTGTAATCAGGTGGAAAAGaacataaaccTTGAAGATCCAAATGAGAAAAAGTTGAATCTAAGTGGTGATGGAGAGCTGGCAGGGTCCTTGCATATGTCAGATATAACAGAAGGAGACAGTGCTGTGTATTTCTGTGGTGTCAGAGAACACGATGGAGGTCAAGGAGCTTTGAAACTGATCAGTAAACTTCACTATGAAAACGAAGACCTGGAAGAGGATTTTCAAGCACGATTTAACATTAAGgggcattcaaaacaaaatgcttttttgcACATTTCTAACATCATAACTACAGACAGTgctgtgtatttctgtgctACACAGTGCTCCAGATCCCCTCCTTCTTGTACAAAAACACCCCTGAGCCAGAACCTCACCAGTCCCTCAGTCAGTGTAAGTGTAATTGTTCAGCAATCCCCTGTGATGCTGATTAAAAGCCCTGGAAAATCTGCACACCTCAACTGCACCAATAGCCAAAGTACACATAACCACATGTACTGGTACCAGCAAGCAGGAGATGGAACTCTGAAGCTCATTGGGTATCTTATAGCAACATCCATCAACCATGAAGCACCATTTcaagatcatttaaaattaagtggAGATGCAACAAAAAAGGGATTCTTACAAATCACTAATTTAACAAATGCAGACAGCGCTGTGTACTTCTGTGCTGTCAGCCAACACAGTGCTGCATACCCCCCTCAGCccttaacaaaaacattatctCACCACAGACCACTATTCACATTTAATGGAAATGGAAGACCTAATGGCtcgttaaatatttatttaataacttCAGAAAACAGCACTGTATTTTTCTGTGCAGCTAGCCAACACAacAGTGACTGTGATGGTGTTCTGATTTCTCAGTGGCCAAGGCAGGTGGTCCATCACCCTGACACTACTGTGGAGATGCACTGTTATCAGAATGACACTGACTATAGCTATATGTACTGGTACAGGCAGGTAAAAGGTGAAGGTCCAGTTCtgatttctgtgtttgtaaaaAGCAACAAACCCAGCTATGAAAATGGTTTCACAACAGGATTCCAAGTGTGGAGCTCTGAGGCTAAGAAATGGTCGTTGAAAGTGGAGAGTATGAAGGCTGCAGACAGTGCAGTATATCTGTGTGCAGCAAGTGAACACAGTGACACAGGAGGGCTGACTTCAAAGTCAAAAGGCAGACTTGCCTCTGACAATCCTTCAGGCAGTAGCAGTGTTCAACAATCTCCTCCTGCACTGTTTATTTACCCTGatcaaaatgctgaaataaactGCACTCATAATATCTCCAGCTATAATACCATTCTTTGGTACCAGCAGGTTAGAGAGGAAAGAGCTTTACATCTGATTGGATATCTAAACTATGATCAACCTGCTCTTGAAGACAATATTGAAGCAAGATTCAAGTTAAGTGGAGATGGAAGGAAGAAAGGATTTTTAAGTATTTCTTCAATTAGAGCTGTAGACAGTGctgtgtatttctgtgcagCCAGCAAGCACGATCTTTCATACTGTAGCAGTGTTCATCAGTCTCCTGATACGCTGTTTAAGAACACTGGTGAACATGCTGAACCCAGTTGCAGCCATAAAATCCCCAACTATATTACGATACTATGGTACAAGCAGCCTAGATACGAAATATCTTTAAATCTAATTGGATATGTAAGCTATGAAAATCCGACACTTGAAGACAAAGTTGACCAGAGGTTCAAATTGAGTGGAGATGGAAGCAAGaaaggctttttaaatatttcctcaATAAAACCTGGAGATAGTGCTGTGTATTTCTGTGGAGGGAATTTCTATTCCCTCTACAAAAACCCTCCTGAGTCA
>TU185255
CCTGTCTTCCATTCAGAGAGTTCAGTCCAGGGAAGTTTCTCTATCTCCAGCACTGAGGTGTCAAAATGTGTAGCGTTTTCATTGTGTTCACTGTGATACTGCACTGGATGACAAATACTTCTGTCAGCCTCAAAGTCCAGCAGTCTCTTGCTCTATATAAGACTCCTGGAGAAGCTGTTCAACTCAACTGCTCTCATGACGACAGTAACTTTGACAAAATCTACTGGTACCAACAATTTCATGGTCAAGGAGCTCTTGAATTTATAGGATTTCTTAATTACAGATCACCAActgttgaaaacaaagcaaagttcAACATTACTGGGGATGCTGAGAAGGAGGGCTTTTTACAAATCTATGATCTAAATGGTGAGGACAgcagtgtgtatttatgtgctgTCAGTAAGC

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000025 True 2970 mRNA 0.42 13 55439 104362
TU185255 False 408 TUCP 0.41 2 64746 65289

Neighbor

gene id symbol gene type direction distance location
AMCG00000029 NA coding upstream 26775 27600 ~ 28664 (+)
AMCG00000027 NA coding downstream 1653 106015 ~ 106682 (+)
AMCG00000031 NA coding downstream 10195 114557 ~ 114778 (+)
AMCG00000030 NA coding downstream 36659 141021 ~ 146934 (+)
AMCG00000028 NA coding downstream 42583 146945 ~ 155807 (+)
AMCG00000035 NA coding downstream 152095 256457 ~ 316480 (+)
G147265 NA non-coding downstream 174351 278713 ~ 284041 (+)
G147286 NA non-coding downstream 233104 337466 ~ 339514 (+)
G147288 NA non-coding downstream 252410 356772 ~ 356988 (+)
G147292 NA non-coding downstream 281928 386290 ~ 386953 (+)
G147313 NA non-coding downstream 366333 470695 ~ 473507 (+)
AMCG00000026 NA other upstream 17664 28694 ~ 37775 (+)
AMCG00000032 NA other downstream 126974 231336 ~ 254441 (+)
G147311 NA other downstream 345290 449652 ~ 498511 (+)
G147416 NA other downstream 958723 1063085 ~ 1116950 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 1931661 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 2299368 2403730 ~ 2403972 (+)

Expression


Co-expression Network