AMCG00000026


Basic Information

Item Value
gene id AMCG00000026
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 28694 ~ 37775 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000026
ATGGAGGAAAATGGACTGAAGCCATCTGAAAGTGCAGTGTACAATAAGGACACCGCTAGTCACTGTGAGGGTATTGAAGTTTCCCAGATCTCCTTTGTCTGGCATCTACGAGGGGAGTCTGCAAAGATTAACTGTGAACACCAGGACAGCAGCTACTATCAAATGTACTGGTTCCGCCAGCTACCAGGGGAGAGCATTCAGCTCATTGTCCGCTCTTCATCTGTTGGTGACCCTGAATTTGAGAATGTCtcaagaaacaaatatgaagTTGAAAAAACTGATGCTCTAAAGGgatattttatcattaaaaatCTGGAGCTAGGAGACAGTGGTGTCTATTTCTGTGCAGCTGGCAAACACAGTGATGTAGAGCTACTGCACAACCACAGAGGCATCAAGATGGTCAGGGTTTTAATTGGGTTCACTGTGATACTGCACTGGCTGACAAATTCCTCTGGCAGTAGCAGTGTTCAGCAGTTTCCCCCTGTTCTGTTTATTAAGAACTCTGGGGAATCTGCTGAACTCAACTGCAGCCACAATATCAACAGCTATAATATTATGCTATGGTACAAGCAATTAGAAAGAAGAACGTTGAACCTGATCGCATACCTATATCATGACAGCAAAACCTTTGAAGATCAGAATGACAAACGATTCAATTTAACTGGAGATGCGAAAAAGCACTCATCTTTACACATTTCCTCAATAACCAAAGCAGACAGTGctgtgtatttctgtgcagCTAGCATGCACAGTGCTACAGGTCCCTCCGACAGCGTCACAGTTCAGCAGTCTCTGACTGTGTTTAAGAATCCTGGGGAAGCTGTTCAACTAAACTGCAGTCATGATGAAAGTAGCAGCAACTATGACAAAATGTACTGGTACCAGCAAGTTGGAAATGGAGCACTGAGACTCATAGGATACATTTATGTTGAATCTGTTACAATGGAGAAAGAGTTTATtggaaaatacaatttatcTGGTGATGGGAGAAAGGAGTTCTTTTTACAAACCTTTGTAGGCACCGTAGCGGACAGCACTATGTATTTCTGTGCAGCAAGTCAACACAGTGCTGCAGATCCCCTCTTTCCTCTACAAAAACCGTCCTGA
>TU185221
TGAAATAGCTGAGCCCTGAAGAGCTGGGACCCATAGCTCCTAGAGCTCAGTTCAGGAcagtgctgctgtgctgctctTCTCTCTCCAGCACAGAGGCATCAAGATGGTCAGGGTTTTAATTGGGTTCACTGTGATACTGCACTGGCTGACAAATTCCTCTGGCAGTAGCAGTGTTCAGCAGTTTCCCCCTGTTCTGTTTATTAAGAACTCTGGGGAATCTGCTGAACTCAACTGCAGCCACAATATCAACAGCTATAATATTATGCTATGGTACAAGCAATTAGAAAGAAGAACGTTGAACCTGATCGCATACCTATATCATGACAGCAAAACCTTTGAAGATCAGAATGACAAACGATTCAATTTAACTGGAGATGCGAAAAAGCACTCATCTTTACACATTTCCTCAATAACCAAAGCAGACAGTGctgtgtatttctgtgcagCTAGCATGCA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000026 True 1110 mRNA 0.43 6 28694 37775
TU185221 False 456 TUCP 0.44 3 35282 36574

Neighbor

gene id symbol gene type direction distance location
AMCG00000029 NA coding upstream 30 27600 ~ 28664 (+)
AMCG00000027 NA coding downstream 68240 106015 ~ 106682 (+)
AMCG00000031 NA coding downstream 76782 114557 ~ 114778 (+)
AMCG00000030 NA coding downstream 103246 141021 ~ 146934 (+)
AMCG00000028 NA coding downstream 109170 146945 ~ 155807 (+)
AMCG00000035 NA coding downstream 218682 256457 ~ 316480 (+)
G147265 NA non-coding downstream 240938 278713 ~ 284041 (+)
G147286 NA non-coding downstream 299691 337466 ~ 339514 (+)
G147288 NA non-coding downstream 318997 356772 ~ 356988 (+)
G147292 NA non-coding downstream 348515 386290 ~ 386953 (+)
G147313 NA non-coding downstream 432920 470695 ~ 473507 (+)
AMCG00000025 NA other downstream 17664 55439 ~ 104362 (+)
AMCG00000032 NA other downstream 193561 231336 ~ 254441 (+)
G147311 NA other downstream 411877 449652 ~ 498511 (+)
G147416 NA other downstream 1025310 1063085 ~ 1116950 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 1998248 2036023 ~ 2058770 (+)

Expression


Co-expression Network