AMCG00000028


Basic Information

Item Value
gene id AMCG00000028
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 146945 ~ 155807 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000028
ATGATGATGACACTCACTTCTATATATGTTGGTATCGACAGGACAAAAAAAGAACTTCCCATAATAGGATATTCTTCTGGTAAAGACAGTGTAGTGATGGAACCAGACTTTAAAGAACCACATTTTACCATAGCCAGACCAGAAATAAGGAATTCCtctttaacaattaaaaatctgGATTTTTGGAGACACAGCAGTGTATTTCTGTGCATCTCTTTCACAGCTGCAACAAATaggaataaattaaatgagCTGCCAGCAGTTCATTACAAGGACCGTTTTTCTGATGCAGTCACTGTGTCTCAGATGCCTGCAAATGTATTCTCAAATCATGGGGCTACATCTGAACTACTTGACTGTCAACATAATGATGATACCCATCTTAGAATCTACtggtacaaacaaaaaaacaaaggagaatTGGTTTTGATAGGGTACTCTCTTGGTGCAGAGAactctgaaaaagaaaaagactttAAAGGAGATAGATTTACAATAAACAGACCTGAAACCAGAAAGTCTTCTTTAGAAATCAAGACGCTGGACTTTGGAGACACAGCAGTATATTTCTGTGCATCAAGTGTTGCACAGTGA

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04658 Th1 and Th2 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000028 True 594 mRNA 0.37 2 146945 155807

Neighbor

gene id symbol gene type direction distance location
AMCG00000030 NA coding upstream 11 141021 ~ 146934 (+)
AMCG00000031 NA coding upstream 32167 114557 ~ 114778 (+)
AMCG00000027 NA coding upstream 40263 106015 ~ 106682 (+)
AMCG00000029 NA coding upstream 118281 27600 ~ 28664 (+)
AMCG00000035 NA coding downstream 100650 256457 ~ 316480 (+)
AMCG00000034 NA coding downstream 161757 317564 ~ 336417 (+)
AMCG00000038 LOC102299462,LOC102207316,LOC108269999,LOC100697238 coding downstream 236371 392178 ~ 418905 (+)
AMCG00000039 NA coding downstream 272747 428554 ~ 428826 (+)
AMCG00000040 NA coding downstream 345688 501495 ~ 569704 (+)
G147265 NA non-coding downstream 122906 278713 ~ 284041 (+)
G147286 NA non-coding downstream 181659 337466 ~ 339514 (+)
G147288 NA non-coding downstream 200965 356772 ~ 356988 (+)
G147292 NA non-coding downstream 230483 386290 ~ 386953 (+)
G147313 NA non-coding downstream 314888 470695 ~ 473507 (+)
AMCG00000025 NA other upstream 42583 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 109170 28694 ~ 37775 (+)
AMCG00000032 NA other downstream 75529 231336 ~ 254441 (+)
G147311 NA other downstream 293845 449652 ~ 498511 (+)
G147416 NA other downstream 907278 1063085 ~ 1116950 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 1880216 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 2247923 2403730 ~ 2403972 (+)

Expression


Co-expression Network