AMCG00000034


Basic Information

Item Value
gene id AMCG00000034
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 317564 ~ 336417 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000034
ATGCGTGGCGCTTTAAACCGACCTGGCCGCGCCGGGAAGCGGAAGACCGGATCAGCGGGCTGCCGTGCTGCTGTGCTGCCGGGGGGAGGCTGCTGGCTGCTGGCTGCTGGCTGCTGGCTGCTGACAAAGACCTCCCCTGCACATCACAAGATGTCCAGGCAAAGAGCATTTACCATAGCTGTAGGCACTGTAGTGGGGGCCACCTTGGGAGTCCTGGTGATCTGGAAAGCATTGCGAAGAAAGCTGCATCCTGGCAAACAAGACAGGGAGCCAGTGCAGGACGAGCAGGTTAGCACCACTGAAAGTGAAGCCTCCACATCCAGTTTGCCGCAGTTGCCCCAGCCTGAGCAGCTGCTGAGGGTAGAGCCCAGCCTGGTGACCTCTGTGGAGGATTGGGAGATGCTGTGGCCCACTCTGCAGCAAGATCTGTCTGCCTTTCCTGTGCTGGGGATCGATTGTGAATGGGTGTCTGTAAAGGGGAAAGCAGGTCCTGTGTCCCTTCTGCAAATGGCCACTTATAGTGGCTTCTGTGTCCTTATCCGTCTGCCCAAATTCCGCTCCCCGCCCTTTCCACACAGCCTTATTGACGTCCTGCAGAATCCCGCCATCCTGAAAGTTGGAGTGGGCTGCTACGAGGACGCTGGCAAACTGGCTCGAGATTACGGGGTGGCGGTGAACTGCACCGTGGATGTGCGCTACCTTGCCATGAGACAAAGACGGATCACTGTTCATAACGGCTTGAGCTTGAAGTCCTTAGCCCAGGACATTCTTAACTTCTCTCTTGAGAAGTCCCTGCAGCTGAGATGTAGCAACTGGGAGGCTGAACAACTTTCCCAGGAGCAGGTAGTGCTGTATGCTGGCAGGGACGCCCAGGTGTCGGTTGCTTTATTCTTCCATTTGCTGGGGCAGGATTCCCTAGAGATGCTCAATGGTGCTGTGCCAGAGAGAGACTTCAAGCAGCTGGTGTCGCAGTGCCAAGGCCTTGTGGATGTGCCCTTCCGAGGGAAAGGGGGAGATGGGGATGAGAAGGGCTCCGACGGCATCGGAGAAAGGAAGCGCAAGAACAAGAGGGCAGTGTCAGACTGCCAGATCTCAGGGGACCAGCAGGTTCCAGACCCTCGCAAACACAGACGCAAGCCCTTGGGAGTCGGCTATTCTGCTAGGAAATCGCCGCTCTATGACAACTGTTTTCTGCATGCCCCAGATGGGCAACCACTATGTACCTGTGACAAGAAGAAAGCCAAGTGGTATCTGGACAAGGGGATTGGAGAGCTGCTGAGTGAGGAGCCATTCATCGTGAGGCTAAAGTTTGAGCCCTCGGGCCGCCCTGAATCGCAGCAGGACTATTACCTCACTGCAAAGGAGAatctgtgtgtggtgtgtggaaAGACAGAGTCCTACATTAGAAAAAATATAGTCCCGCATGAGTACCGTAGGCACTTCCCCACGGAGATGAAAGACCACAACTCGCATGACGTATTGCTGCTGTGCACCGCCTGTCATGCTGCCTCCAATTACCATGACAACCTGTTGAAGCAGGAGCTCGCCGAGGAGCACAGCGCCCCCCTGGGCTGTGAGGAGGGTGTGCGGCTGATGGAGGACTCAGGCCGACGGCACGTGCGCTCAGCAGCCAGGGCACTGCTTAACGCGGACGGTCTGCCCCAGAGCCGCAGGGAGGAGCTGTTGGGCATCATAAACAAATTCTTCAGTGTAGAGGAGATCACCCCTGACTTACTTAAAAGGGCTGCCAGTCTGGAAACCAGGATCTTCAATGAGAGCTACATCCCTCACGGGCTGAAAGTTGTCCAGGCCTATTCCCAGGGAGGGCTCTGTGGCTTAATGGACCTGGAGAGGCACTGGCGGCAGCACTTCTTGTCATCCATGCAGCCCCGGCACCTCCCTCCGCTGTGGTCTGTTGACCACAACCACAGCAAGCTGCTGCGCAAGTATGGGGAGGACCTCAAAATCCAACTTAACTGAAAACCTAAGAACCTTGCTCACCTCAGAAGCACACTCCCAGGCCGGGGGGCTTTGGTGTTTGCTGCAGATGAAAACCATAGAAAAAGCAGGACTCTCTGGGTTTCCATCCCATACCTTAACCAACTTTAATGAAATCCACACTAACTTTATTGTGGTATAACAGATTAGCTCAGAGACCACTCTGAACCCAACGCAGGATGTtagactggaaaaaaaaaaaagcactttgaatGTGGGGCACTTAGAATTTAATGGgggagaggagaagaaaaatccCGGTCAGCACATtgctattacatttttaaaatatttaaattaaggaaATGACACTGAAAAACACTAAGAAAAAAACCTACATCTTCGGTTTTAACCTCAATCTCAAGCCGGcacttaattttcttttatttttacatgtaatgCATAATGCAGATTCCTGCAGGTTTGTAGCTTTTGAGGTATAGGTATCATGtgtttacatacataaaactaaaaaaaggtTGTATCATTTAACCTCGTTTGTGAGTGCCACAATGCAAGATGCTAACTGGTGAAAATTGGTGCCCCCTAAACTGCACCTGAGTATTTCAGTTTGTGGTCCTTCCTGTGAACTGGcccattatacatatattttttttaattcagtgccTTTGGAAAAGGGGTTTTGTTATGAATGCATAAGTTCATCCCTGATTCATGATTCCTACACCCAGTTAGTTTTCTTCCTTAAAATCTCATcatattctgaaaatgttgcCATGTATAACTCCTCGGGTTAGATTAGAAGGTTTGGTACGGGCCAGTGGTAGTCcagacattacatacatttggTGTTGTTTGTGGGATTTCTAGAGTTTCCTTGAATGTGCCTTTTCTCTGTTTACACCTCTACATGAGAATCCAAAGTCATTCCTAAGGATTAACTTGATTCCCTCCAGTGTCTGTATCTTCCTGGCTCCAGTCTTAACTGTCGTTATGAAATCATAATTCATAGTAAGTTGTAAACTCAAGCTTAAAAGCTAGCCGCTGCCAACATTTACCTTGAatttagatgtgtgtgtatatatatattttgttttacctttatCTGTACAGTGGTGccaactttcttattttctaacTTGAGTGAAATTAGATCCATTTTTAACTCCCTTACATGTGATTTACTTAAGCTGAACAGCTTCCTAGGCACCCCTAAACTTTTACTAAGAAACTTGTTGCGTTTCACTTtgtcaaaataactgaaagctGCTATgtttccttaaataaaatattgtaaattaacCTATtaa

Function

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0008408 3'-5' exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K20777 EXD2; exonuclease 3'-5' domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000034 True 3269 mRNA 0.49 9 317564 336417

Neighbor

gene id symbol gene type direction distance location
AMCG00000035 NA coding upstream 1084 256457 ~ 316480 (+)
AMCG00000028 NA coding upstream 161757 146945 ~ 155807 (+)
AMCG00000030 NA coding upstream 170630 141021 ~ 146934 (+)
AMCG00000031 NA coding upstream 202786 114557 ~ 114778 (+)
AMCG00000027 NA coding upstream 210882 106015 ~ 106682 (+)
AMCG00000038 LOC102299462,LOC102207316,LOC108269999,LOC100697238 coding downstream 55761 392178 ~ 418905 (+)
AMCG00000039 NA coding downstream 92137 428554 ~ 428826 (+)
AMCG00000040 NA coding downstream 165078 501495 ~ 569704 (+)
AMCG00000041 NA coding downstream 393485 729902 ~ 743938 (+)
AMCG00000044 NA coding downstream 407926 744343 ~ 787026 (+)
G147265 NA non-coding upstream 33523 278713 ~ 284041 (+)
G147286 NA non-coding downstream 1049 337466 ~ 339514 (+)
G147288 NA non-coding downstream 20355 356772 ~ 356988 (+)
G147292 NA non-coding downstream 49873 386290 ~ 386953 (+)
G147313 NA non-coding downstream 134278 470695 ~ 473507 (+)
G147314 NA non-coding downstream 145697 482114 ~ 485461 (+)
AMCG00000032 NA other upstream 63123 231336 ~ 254441 (+)
AMCG00000025 NA other upstream 213202 55439 ~ 104362 (+)
AMCG00000026 NA other upstream 279789 28694 ~ 37775 (+)
G147311 NA other downstream 113235 449652 ~ 498511 (+)
G147416 NA other downstream 726668 1063085 ~ 1116950 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other downstream 1699606 2036023 ~ 2058770 (+)
G147726 LOC104962440 other downstream 2067313 2403730 ~ 2403972 (+)
AMCG00000094 NA other downstream 3354355 3690772 ~ 3699093 (+)

Expression


Co-expression Network